Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01449 ATGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTAGTTTATTTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTAGTGCTACTAATCCTGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTTAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGAAAATATACTTATCATGAATTTGAAGCTATGGCAAACAAGGCCTTTTCGAATAAATTTTGCAGTTCGGATGATCTTTCTTCTTCGAATATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAAGGTGCAGTAGAGTATGGAGTCAACATTGAGGGAAGTGTCTTTTCATGTGATCCTGATGATAAGCTTGGAACAAGCAAATTCAATTTGAAGAATTTAGCGCGACTGCCGCAGTCTACGTTGCGTTTAGTTGACCGAGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTCTGCAGCCTCTCAATTTGAAAAAACTGTGTTGAATAATGTGTATTGCAACAAAGTCTTGAAAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAAGCATGTTCCCGCCGAATGTCTTGTTACAACATGATGTGCCGGTTTACAAGGCCGTGCAGAAACCAGGAGAGTTTGTCGTCACCTTTCCTAGATCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCAGTAAACTTTGCTCTTGGTGATTGGTTTCCACTCGGGGCTGCGGCTAGCAAACGTTATGCATATCTCAGAATGTTACCGATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTGATATACAAGTCCTCAAAAGTCACTAGTTTCAAGAACAAACTTGAAGACAACGCATCTTATCGTGCAATTATACTATCGTTCTTGCAGCTTATGCAATTTTATAAGACATCGCTATCGCAGTTGAGCAGTTCAAGAAATTCGACAAGCTCCTCAAATACATTTGGTTCTCTTACATGCAGCATCTGCCATAGGGATTGCTATGTAGCTTACTTGTTGTGCAAGAAATGTTATTCCTATCCAATTTGTTTTTTCCATGACATTGTGCCGCAAACCTGCTTATGTGGGAGAAAATATACCGTTTTTACAAGGAATGACATGTTGGAACTCGAACATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATTGAGGCGTTTTCGTTAACAAGTATATTCTCATATAACATAAATGAATGCATCAAAGATCTCAAGAACAATAATTGGCATGAAGAAAAAAGTGCTAGAAGAGCTTTTATCTCTCTAGGGGCACATCAAAGAAAAGTTGCGGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGAAGACAAAGAATCATCGTAGAAACAATCCGCCTCCACCATCGGTGATGAGTAGCAAAAGACCACGAATCCTTTATAACTCGAGCAAACATGATCCAAAATCGATCATAAAAGTTCCTACAGTATCTTCTCTTTCGACGACATCTGAAAAATCAAAGTAA 1728 0.3767 MIPECPIYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPISATNPADYVLMKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGRKYTYHEFEAMANKAFSNKFCSSDDLSSSNIEKAFWHEMIHGEKGAVEYGVNIEGSVFSCDPDDKLGTSKFNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSSAASQFEKTVLNNVYCNKVLKEHGENGAFQFLAQKTSMFPPNVLLQHDVPVYKAVQKPGEFVVTFPRSYHAGFSHGFNCGEAVNFALGDWFPLGAAASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVTSFKNKLEDNASYRAIILSFLQLMQFYKTSLSQLSSSRNSTSSSNTFGSLTCSICHRDCYVAYLLCKKCYSYPICFFHDIVPQTCLCGRKYTVFTRNDMLELEHAAKSFQQEKECIEAFSLTSIFSYNINECIKDLKNNNWHEEKSARRAFISLGAHQRKVADNIKHNVEKNKKKTKNHRRNNPPPPSVMSSKRPRILYNSSKHDPKSIIKVPTVSSLSTTSEKSK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01449 575 SMART JmjN_1 4 45 IPR003349 -
Trre2g01449 575 SUPERFAMILY Clavaminate synthase-like 83 340 - -
Trre2g01449 575 FunFam Lysine-specific demethylase isoform A 1 349 - -
Trre2g01449 575 Pfam JmjC domain, hydroxylase 182 305 IPR003347 -
Trre2g01449 575 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 554 - -
Trre2g01449 575 ProSiteProfiles JmjN domain profile. 5 46 IPR003349 -
Trre2g01449 575 MobiDBLite consensus disorder prediction 516 575 - -
Trre2g01449 575 SMART cupin_9 152 322 IPR003347 -
Trre2g01449 575 MobiDBLite consensus disorder prediction 561 575 - -
Trre2g01449 575 ProSiteProfiles JmjC domain profile. 152 322 IPR003347 -
Trre2g01449 575 Gene3D Cupin 5 365 - -
Trre2g01449 575 Pfam jmjN domain 6 38 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01449 Trre-Chr2 11635878 11638735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01449 2 468 JUMONJI Transcription Factor Family AT2G34880 30.784 8.82e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g01449 JmjC 7.6e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01449 - - cam:101502558 889.412