Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01447 ATGGGAGCAACAAATGTTGTCAAATGCAAAAGAAGAAGAATGGTTGATAAAAGTTCAATTACTCGCGAATCGAGTAAATTTGATTCGGTCGATCTAAATTGGACCAACATGATTCCAGAATGTCCAATATATCATCCATCAGAACAAGAATTTGAGCATCCTTTAGTTTATTTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTAGTGCTACTAATCCTGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTTAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGAAAATATACTTATCATGAATTTGAAGCTATGGCAAACAAGGCCTTTTCGAATAAATTTTGCAGTTCGGATGATCTTTCTTCTTCGAATATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAAGGTGCAGTAGAGTATGGAGTCAACATTGAGGGAAGTGTCTTTTCATGTGATCCTGATGATAAGCTTGGAACAAGCAAATTCAATTTGAAGAATTTAGCGCGACTGCCGCAGTCTACGTTGCGTTTAGTTGACCGAGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCTGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTCTGCAGCCTCTCAATTTGAAAAAACTGTGTTGAATAATGTGTATTGCAACAAAGTCTTGAAAGAACATGGAGAGAATGGTGCATTCCAATTTCTTGCACAAAAAACAAGCATGTTCCCGCCGAATGTCTTGTTACAACATGATGTGCCGGTTTACAAGGCCGTGCAGAAACCAGGAGAGTTTGTCGTCACCTTTCCTAGATCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGAGAAGCAGTAAACTTTGCTCTTGGTGATTGGTTTCCACTCGGGGCTGCGGCTAGCAAACGTTATGCATATCTCAGAATGTTACCGATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTGATATACAAGTCCTCAAAAGTCACTAGTTTCAAGAACAAACTTGAAGACAACGCATCTTATCGTGCAATTATACTATCGTTCTTGCAGCTTATGCAATTTTATAAGACATCGCTATCGCAGTTGAGCAGTTCAAGAAATTCGACAAGCTCCTCAAATACATTTGGTTCTCTTACATGCAGCATCTGCCATAGGGATTGCTATGTAGCTTACTTGTTGTGCAAGAAATGTTATTCCTATCCAATTTGTTTTTTCCATGACATTGTGCCGCAAACCTGCTTATGTGGGAGAAAATATACCGTTTTTACAAGGAATGACATGTTGGAACTCGAACATGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATTGAGGCGTTTTCGTTAACAAGTATATTCTCATATAACATAAATGAATGCATCAAAGATCTCAAGAACAATAATTGGCATGAAGAAAAAAGTGCTAGAAGAGCTTTTATCTCTCTAGGGGCACATCAAAGAAAAGTTGCGGACAACATCAAGCACAATGTTGAAAAGAATAAAAAGAAGACAAAGAATCATCGTAGAAACAATCCGCCTCCACCATCGGTGATGAGTAGCAAAAGACCACGAATCCTTTATAACTCGAGCAAACATGATCCAAAATCGATCATAAAAGTTCCTACAGTATCTTCTCTTTCGACGACATCTGAAAAATCAAAGTAA 1836 0.3758 MGATNVVKCKRRRMVDKSSITRESSKFDSVDLNWTNMIPECPIYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPISATNPADYVLMKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGRKYTYHEFEAMANKAFSNKFCSSDDLSSSNIEKAFWHEMIHGEKGAVEYGVNIEGSVFSCDPDDKLGTSKFNLKNLARLPQSTLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSSAASQFEKTVLNNVYCNKVLKEHGENGAFQFLAQKTSMFPPNVLLQHDVPVYKAVQKPGEFVVTFPRSYHAGFSHGFNCGEAVNFALGDWFPLGAAASKRYAYLRMLPIIPYEELLCKEAMLIYKSSKVTSFKNKLEDNASYRAIILSFLQLMQFYKTSLSQLSSSRNSTSSSNTFGSLTCSICHRDCYVAYLLCKKCYSYPICFFHDIVPQTCLCGRKYTVFTRNDMLELEHAAKSFQQEKECIEAFSLTSIFSYNINECIKDLKNNNWHEEKSARRAFISLGAHQRKVADNIKHNVEKNKKKTKNHRRNNPPPPSVMSSKRPRILYNSSKHDPKSIIKVPTVSSLSTTSEKSK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01447 611 PANTHER LYSINE-SPECIFIC DEMETHYLASE 34 590 - -
Trre2g01447 611 ProSiteProfiles JmjN domain profile. 41 82 IPR003349 -
Trre2g01447 611 Pfam jmjN domain 42 74 IPR003349 -
Trre2g01447 611 SMART JmjN_1 40 81 IPR003349 -
Trre2g01447 611 SMART cupin_9 188 358 IPR003347 -
Trre2g01447 611 Pfam JmjC domain, hydroxylase 218 341 IPR003347 -
Trre2g01447 611 ProSiteProfiles JmjC domain profile. 188 358 IPR003347 -
Trre2g01447 611 MobiDBLite consensus disorder prediction 552 611 - -
Trre2g01447 611 FunFam Lysine-specific demethylase isoform A 36 385 - -
Trre2g01447 611 MobiDBLite consensus disorder prediction 597 611 - -
Trre2g01447 611 SUPERFAMILY Clavaminate synthase-like 119 376 - -
Trre2g01447 611 Gene3D Cupin 41 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01447 Trre-Chr2 11635770 11638735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01447 38 504 JUMONJI Transcription Factor Family AT2G34880 30.784 1.76e-60 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g01447 JmjC 8.4e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01447 - - cam:101502558 934.48