Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01436 ATGATAGAGGCACTAATTTCCTTTTTGAATGCACAGGCTGCTCAACTCAATTTTTTTGTTGGATCTCATGTTTGGGTTGAAGACCCTGATGTAGCATGGATAGATGGAGAAATTCTTGAATCTAATGATCAAGAGATCACCATTAGCAATGAATCAGGAACAAAGGTTGTAAGCAAATCAGCTAATATCTATCCAAAAGATCCTGAATTTCCAACCGAGGGCGTGGAAGATATGACAAGACTTGCATATCTGCACGAACCAGGTGTACTTCAAAATTTGCAAATTCGTTATAGTATCAATGAAATATATACATACACAGGAAACATATTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCACATGAGACAATGGCAAAGTATAAAGGTGTGGTTTTTGGTGAGCAGAGTCCACATCCTTTTGCAATTGCAGGTTATGCATATAGCAAGATGATAAATGAAGAAAGAAGCCAAGCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAAAGTACAAAGATGCTTATGCATTATCTTGCCTATTTAGGAGGGAGAGCAGCAACTGAGGGAAGGTCTGTGGAGCAACAAGTTCTAGAGTCCAATCCTGTTTTAGAAGCATTTGGGAATGCTAAGACTGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACTTATTTGCTGGAACGATCACGTGTTTGTCAAGTTTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCACAAGAGGATGTTGATAGGTTCAAATTGGGAAATCCAAGAAGCTTTCATTACCTCAATCAATCAAATTGCTTTGAATTGGATGCATTGGATGATTCTAAGGAGTATCTTGCAACTAGAAGAGCCATGAATGTTGTTGGAATCAACAATGATGAACAGGATGCTATATTTCGAATAGTAGCCGCTGTACTTCATTTAGGAAATATTGAATTTGTTAAAGCAATGGATGAAGGGATGGATTCCTCTAAACCGAAGGACGATAAATCTTATTTCCATTTGAAAACTGCAGCTGAACTTTTGATGTGTGATGAAAAGTCCCTTGAAGACTCATTTTGCAAACGAGTTATGGTGACTCGTGGTGATACGATAACAAAATGTCTTGATCCAGATTCTGCAGCTCTAAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGAGAAGATTAACAACTCTATTGGACAAGATCCAAATTCAAAGAACTTAATTGGAGTTCTTGATATATATGGATTTGAAAGTTTCAAGACAAACAGCTTCGAGCAATTTTGTATCAACTTGACAAATGAGAAGTTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTGATTGGAGTTATATCGAGTTCGTTGATAATCAAGATGTTCTTGATCTTATTGAGAAGAAACCTGGTGGTGTTATTGCTCTTCTGGATGAGGCCTGTATGTTTCCGAGATCAACGCACGAAACATTTGCTGAAAAGCTATATCAAACACTTGGTAACAATAAACGCTTCAGCAAGCCAAAGTTGTCGCGAACTGATTTCACAATCAATCACTATGCCGGTGATGTCACTTATCAAACCGACCTTTTCCTTGATAAAAACAAAGACTATGTTGTTCCGGAGCATGCTGCGCTGCTCAGTGCTTCCAATTGCTCCTTCGTTTCAGGACTTTTCCCACCTTTACCTGAGGAAACTACGAAATCGACAAAGTTTTCATCCATAGCCACTCAGTTTAAGCAACAACTTCAAGCTTTGCTTGAAACCTTGAATGCTACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAACCAGGGATATTCGAGAACAACGATGTATTGCAGCAGCTTCGATGTGGGGGAGTAATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCAACTAGAAAGACCTTCGATGAATTTGTTCAGCGGTTTACTATATTGGAACCTAAGGCTTTAAAATCATGCCCTGATGAGACGACTGCTTGCAAGATGCTTCTAGATAAAGCAAATCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTTTGAGGGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCCTAGGAAGATCTGCAATCGTTATTCAGAAAAAAGCTCGCACGTTTATTTGTGAGAAAAAATACAAATTAATGCGATTCTCTGCCACAGAAGTACAAAGGGCTGTTAGAGGACAACTTGCAAGACTTTGTTACGAACGCATGAGAAGGGAGGCTGCCTCTTTGATAATTCAGAAACAATGCCGCATGTATCTTTCGAGAAGTGCTTATAAAACTACCTATGCCAGAGCTATTTGTATTCAAACCGGCATGCGAGGGATGGCTGCTAGAAATGAACTTAGATACAGGAGGCGGACACAAGCTTCAATTGTTATTCAAGGTCAATACAGATGTTATCGAGCTCGTACTTATTACAAAAGGCTAAAGAGAGCAACAATTGCAGTACAGTGTTCGTGGAGGCGAACAAGAGCACGACGAGAACTTCGAAAGCTTAGAATGGCTGCTAAGGAATCAAAGGCCCTAGAAGCCGCGAAACATAATCTAGAAAAGCAAGTTGAGGAACTAACTTCGTCTCTAGAATCAGAGAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAACATGCTTTGGAAGAGATGGAGGTTCGATTCGAAGAAACTAAGACGAAACTCACTCAGGAATGTGAGGCTGCGAAGAAAGCAGCTGAGCAAACACCAACTATACATGAAAATGAAAATAATGTTGCTGACAATGAATTGATAATTAAGCTTACTGAAGAGAATGAAAAACTCAAGGAGATTGTTAATTCAATGGAAAATAAAACTAAACTAGAGCTTCCTGATAATGTTACTGACAATGAAGTGATTAATAAGCTTTCTGAAGAAAATGAACAGCTCAAGGAGCTTGTTAATTCATTGGAAAAGAAAACTAAAGACGAGATTCCTGCCCATTTTACTGAGAATGAAGTGATTAGTAAGCTTACAGAAGAAAAAGAACAGTATAAGGAACAGGTTAAATCATTGGAAAAGAAAATTGACGAGACAGAGAAGAAATATGAAGAAAGTAGCAGGCAAAGTGAGGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGCTAAAGACAAAATTGCAAAGGCTTGAAGAAAAATTTTCTGATTTGGAATCTGAGAATCAAATTTTTCGGAAGCAAGCGCTATTGAGTTCAACATCCCAGAGAATGACAGACAAAGTTGCTGCAATTCCGCCTTTGGAAAATGGTCAACAGGCACCAGTAAAAACACTTGGTACAGCAGAATCTGTGAGGAGATCTCATATGGAGAGACATCAAGAAAGTGTAGAGACTCTTTTCAAATGTGTGACAAAAGACCTTGGATTCTGTGAAGGGAAACCTGTTGCAGCATTTACCCTTTATAACTGTTTACTACATTGGAAATCTTTTGAAGCAGAGAAGACAAGTATATTTGATCGTCTTATTATGCTCATTGGCTCTGCAATAGAGGATCAGGATAATAACAATTGTATGGCTTATTGGCTATCCAATACCGCTGCTTTGTTTTTCCACCTTCAACGATGTTTAAGAGTGCCAGCACGAAAACCACCCACTCCGACAGGATTTTTTGGGAGGATGGCCCAGGGTTTCCGATCATCGAATAGTCTTTCCAGTAGTTCATTTGATGTAGTGCAACAAGTTGATGCAAAGTATCCAGCTTTGCTGTTCAAGCAACAACTTGCAGCTTATGTAGAAAAGATATATGGAATTGTTCGAGAAAATATGAAGAAAGAATTGTCCCCTCTTCTTTCTTCTTGCATCAAGGATCCCAAAACACAAGACGGCAACGGCCAACCAACTGGTTCATGGCACAACATTACTGAATGCCTTAATAAATTTCTCAATATTTTGAAAGAAAATTACGTGCCTCCCGTTCTAATTCAAAAGGTATTTAATCAGACGTTTCAATACATCAACGCAGAAATCTTTAACAGCCTTATATTGCATAAAGAATGTTGCACACTCGACAATGGAGAATATGTAAAATCAGGGTTAACTGAACTAGAACAATGGTGTAATGAAGTAACCAAAGAGTATGCTGGCACATCTTTGGATGAACTCAACCATTCAAAACAAGCAGTTAGATTCATGGTTTCTGAAAAGAAGGATGAACTATCCTATGATGATCTTACAAACGACGTCTGCCCTGTGTTGAGTCCTCAACAGCTTTATAGAATATGTACACTATTCTTGGATGAAAATGACAATACCAAAAGTGTATCAACAGATGTCACTACTAGATTAAAGCTTCTAATGACAGATGATGTAGTTGATGATGACAAATCCTTCTTGTTAGAAGACAATTCAAGTGTTCCTATTATTGTGGAAGAGATTTCTCATTCAAATCAAGATAAGACAATTCCAAAAGTAAAACCACCTGCAGAACTACTTGAGAGTGCAGCCTTCCAATTTTTACATGATTATAGTTAA 4677 0.3823 MIEALISFLNAQAAQLNFFVGSHVWVEDPDVAWIDGEILESNDQEITISNESGTKVVSKSANIYPKDPEFPTEGVEDMTRLAYLHEPGVLQNLQIRYSINEIYTYTGNILIAVNPFQRLPHLYAHETMAKYKGVVFGEQSPHPFAIAGYAYSKMINEERSQAILVSGESGAGKTESTKMLMHYLAYLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVDRFKLGNPRSFHYLNQSNCFELDALDDSKEYLATRRAMNVVGINNDEQDAIFRIVAAVLHLGNIEFVKAMDEGMDSSKPKDDKSYFHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKCLDPDSAALSRDALAKIVYSRLFDWIVEKINNSIGQDPNSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTLGNNKRFSKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLSASNCSFVSGLFPPLPEETTKSTKFSSIATQFKQQLQALLETLNATEPHYIRCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVQRFTILEPKALKSCPDETTACKMLLDKANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSAIVIQKKARTFICEKKYKLMRFSATEVQRAVRGQLARLCYERMRREAASLIIQKQCRMYLSRSAYKTTYARAICIQTGMRGMAARNELRYRRRTQASIVIQGQYRCYRARTYYKRLKRATIAVQCSWRRTRARRELRKLRMAAKESKALEAAKHNLEKQVEELTSSLESEKRMREAKTQENEKLQHALEEMEVRFEETKTKLTQECEAAKKAAEQTPTIHENENNVADNELIIKLTEENEKLKEIVNSMENKTKLELPDNVTDNEVINKLSEENEQLKELVNSLEKKTKDEIPAHFTENEVISKLTEEKEQYKEQVKSLEKKIDETEKKYEESSRQSEERMNQIIETESKMIELKTKLQRLEEKFSDLESENQIFRKQALLSSTSQRMTDKVAAIPPLENGQQAPVKTLGTAESVRRSHMERHQESVETLFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIMLIGSAIEDQDNNNCMAYWLSNTAALFFHLQRCLRVPARKPPTPTGFFGRMAQGFRSSNSLSSSSFDVVQQVDAKYPALLFKQQLAAYVEKIYGIVRENMKKELSPLLSSCIKDPKTQDGNGQPTGSWHNITECLNKFLNILKENYVPPVLIQKVFNQTFQYINAEIFNSLILHKECCTLDNGEYVKSGLTELEQWCNEVTKEYAGTSLDELNHSKQAVRFMVSEKKDELSYDDLTNDVCPVLSPQQLYRICTLFLDENDNTKSVSTDVTTRLKLLMTDDVVDDDKSFLLEDNSSVPIIVEEISHSNQDKTIPKVKPPAELLESAAFQFLHDYS 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01436 1558 ProSiteProfiles IQ motif profile. 867 896 IPR000048 GO:0005515
Trre2g01436 1558 SMART DIL_2 1378 1485 IPR002710 -
Trre2g01436 1558 Pfam IQ calmodulin-binding motif 798 817 IPR000048 GO:0005515
Trre2g01436 1558 Pfam IQ calmodulin-binding motif 845 865 IPR000048 GO:0005515
Trre2g01436 1558 Coils Coil 1053 1129 - -
Trre2g01436 1558 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 19 68 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 ProSiteProfiles IQ motif profile. 796 822 IPR000048 GO:0005515
Trre2g01436 1558 Pfam DIL domain 1379 1479 IPR002710 -
Trre2g01436 1558 ProSiteProfiles Dilute domain profile. 1221 1503 IPR002710 -
Trre2g01436 1558 Gene3D - 263 321 - -
Trre2g01436 1558 Gene3D Myosin VI head, motor domain, U50 subdomain 323 614 - -
Trre2g01436 1558 Gene3D - 452 636 - -
Trre2g01436 1558 Gene3D Kinesin motor domain 76 675 IPR036961 -
Trre2g01436 1558 Coils Coil 880 952 - -
Trre2g01436 1558 Coils Coil 1011 1041 - -
Trre2g01436 1558 PRINTS Myosin heavy chain signature 495 523 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 PRINTS Myosin heavy chain signature 442 470 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 PRINTS Myosin heavy chain signature 207 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 PRINTS Myosin heavy chain signature 160 185 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 PRINTS Myosin heavy chain signature 103 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 FunFam Myosin 2 323 441 - -
Trre2g01436 1558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 798 IPR027417 -
Trre2g01436 1558 CDD MYSc_Myo11 87 733 IPR036018 -
Trre2g01436 1558 CDD MyosinXI_CBD 1172 1525 IPR037975 GO:0007015
Trre2g01436 1558 FunFam Myosin heavy chain 263 318 - -
Trre2g01436 1558 FunFam Class V myosin 452 591 - -
Trre2g01436 1558 ProSiteProfiles IQ motif profile. 844 873 IPR000048 GO:0005515
Trre2g01436 1558 Gene3D - 748 798 - -
Trre2g01436 1558 Gene3D - 846 895 - -
Trre2g01436 1558 Gene3D - 799 845 - -
Trre2g01436 1558 SMART iq_5 843 865 IPR000048 GO:0005515
Trre2g01436 1558 SMART iq_5 795 817 IPR000048 GO:0005515
Trre2g01436 1558 SMART iq_5 866 888 IPR000048 GO:0005515
Trre2g01436 1558 SMART iq_5 770 792 IPR000048 GO:0005515
Trre2g01436 1558 SMART iq_5 818 840 IPR000048 GO:0005515
Trre2g01436 1558 SMART iq_5 747 769 IPR000048 GO:0005515
Trre2g01436 1558 FunFam unconventional myosin-Va 847 894 - -
Trre2g01436 1558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 895 IPR027417 -
Trre2g01436 1558 Coils Coil 983 1003 - -
Trre2g01436 1558 ProSiteProfiles IQ motif profile. 821 848 IPR000048 GO:0005515
Trre2g01436 1558 SMART MYSc_2a 67 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 ProSiteProfiles IQ motif profile. 771 800 IPR000048 GO:0005515
Trre2g01436 1558 ProSiteProfiles Myosin motor domain profile. 73 745 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 PANTHER MYOSIN 65 1491 - -
Trre2g01436 1558 FunFam unconventional myosin-Va 798 846 - -
Trre2g01436 1558 Pfam Myosin head (motor domain) 75 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g01436 1558 Gene3D - 680 743 - -
Trre2g01436 1558 Pfam Myosin N-terminal SH3-like domain 21 61 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01436 Trre-Chr2 11553009 11566091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01436 13 1556 Myosins gene family AT1G04600 58.607 0.0 1948
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01436 K10357 - gmx:100788123 2396.7