Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01421 ATGAGTTCTGATTCTAAACAAAATAATAATCTTCCTATTAATGTGGTAGAAAAGGTTGATGATGCTTACCTTTCAGCATTGATATTATGTTTTAGTAGGATTTTTCCTGCAATACTAAATGCTGCTGTTGATCTCAATTTATTTGATATCATAGCTAAATTACAAAATTCAAGTGGTAATAATAATTCTAGCTTTTCTGCTTCTGAAATTGCTTATGAGCTTCCAAACCAACACGCTGAATTGGCTGAGAGGCTTGAACGCATGTTGAATGTGTTGGCTAGCAATTCTCTTCTCAATTGTTCAATTCGTACAAATGAAGATGGTAAGAGAGAAAGAGTTTATGGTCTCTCTTCAATTGGTCAATACTTTGCACATGATAAAGATGGAGGCTCTTTGGGTCCACTCTCAACATTAATCCATAGAGGATGTAACAGTGTTTGGGATGATACAAAGGAAGCAATTTTGGATCCTGATGTGAAAACTGTTTTCCAAAGTATCAATGGGACATCATTTTATCAATATACGAAGACAAATATTGAATTGAATGATATTACTAACAAAGCAATGGCCCATTCTGGTTCATTAGAAATGAAAAGGGTCCTTACACTATACAAAGGTTTTGAGGAAGTATCAACATTGGTTGATGTTGGAGGTGGATTAGGAGAGACCTTAAAAGTTATTATATCTCAATATCCTTCCATTAAAGGAATTAATTTTGATTTGCAACAAGCCGTTCGAGATGCACCTTCTTATTCAGAGCATGTTGGAGGAGATATGTTTGAAAGTGTTCCAACTGGTGATGCCATTTTACTAAAGCTTGTATGTCATAATTGGGGAGATGAAGAATGTATGAAGTTTTTGAAAAATTGTCACAAAGCTCTGCCAAAACATGGGAAAGTGATTATTTTGGATTATATCATTCCTGAGGTGCCAAATCCAAGCAATATGTCTAAGCATGTTTGTGATATTGACAATCTCATGTTTTTAGTAACAACTGGAAAGGAAAGAACTAAGAAAGAATTTGAGAGTTTATGCAAGAAATCTGGATTTTCTAAATTTTATGTTGCTTGCAGTGAATTCTCAGCCATGTCAGGAGTGATGGAATTTTATAAATAA 1116 0.3414 MSSDSKQNNNLPINVVEKVDDAYLSALILCFSRIFPAILNAAVDLNLFDIIAKLQNSSGNNNSSFSASEIAYELPNQHAELAERLERMLNVLASNSLLNCSIRTNEDGKRERVYGLSSIGQYFAHDKDGGSLGPLSTLIHRGCNSVWDDTKEAILDPDVKTVFQSINGTSFYQYTKTNIELNDITNKAMAHSGSLEMKRVLTLYKGFEEVSTLVDVGGGLGETLKVIISQYPSIKGINFDLQQAVRDAPSYSEHVGGDMFESVPTGDAILLKLVCHNWGDEECMKFLKNCHKALPKHGKVIILDYIIPEVPNPSNMSKHVCDIDNLMFLVTTGKERTKKEFESLCKKSGFSKFYVACSEFSAMSGVMEFYK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01421 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 371 IPR016461 GO:0008168
Trre2g01421 371 Gene3D - 34 200 IPR036388 -
Trre2g01421 371 FunFam Caffeic acid 3-O-methyltransferase 3 123 - -
Trre2g01421 371 PIRSF O-mtase 3 371 IPR016461 GO:0008168
Trre2g01421 371 Pfam Dimerisation domain 38 93 IPR012967 GO:0046983
Trre2g01421 371 PANTHER O-METHYLTRANSFERASE 32 353 IPR016461 GO:0008168
Trre2g01421 371 Gene3D Vaccinia Virus protein VP39 182 358 IPR029063 -
Trre2g01421 371 CDD AdoMet_MTases 212 307 - -
Trre2g01421 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 143 357 IPR029063 -
Trre2g01421 371 SUPERFAMILY "Winged helix" DNA-binding domain 19 128 IPR036390 -
Trre2g01421 371 Pfam O-methyltransferase domain 147 351 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01421 Trre-Chr2 11386459 11390417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01421 12 360 Monolignol Biosynthesis Gene Families AT5G54160 43.059 8.26e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01421 - - aprc:113869089 493.812