Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01413 | ATGGCCAATAAATCTGAATCCGAAGTGTGTGATGATGCAATTCCACCTCCAAAAATTTGCAAAAGAGAGTGTGAGGATGAAGATCAGGAGGAAGTGATTACAAAGAAGCAGAAGAGAGATGATGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATTATTGTGAACATGATAATAAACTTGAAGCTGAAAACGAATCGGCTACTGGTTGTGGTAATTTGGAATCATTGGATGATGGTATCTCAGATTCTGACTCTCACAGAAGCTCTGGTGAGGATAATCCTGAAGATTTGGAGAGTCCGGAGTACAATGAGGAAGAAATAGAGGAAAAAGTTTCCAAAACACCTCAGGAAAGGCATGAAACCCCAGACACTCTAAACGGAAAATATGCTGAATCAAAGACAATATATGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGATTCAACACAGATCCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAAGCCCTTGAATTGGATGATACAGAATTATTGAATCGTCGCATCAAAGTTGGTATAGCTGTACAAAAGAGTGAATATCCCCCCTATAAAAGCAACTTGAGCAGCTCATTCAATAAGGGTGGAAATCTTCAATCACACACCGTAAAGGGGTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAATGGTGCATCAAAGACCATATATGTCAGAAACTTGGCATACTCCGTGGAACGACCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGATCGCGACGGGAACTTTAAAGGCTATGGACATGTTCAGTTTGCCACAGCAGAAGCAGCACAGAAGGCTCTTGCGTTCAATAAGAAAGTATTTTTTAAGCGTCTTATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATTCCCCTAATAGAAGCAGCTGGTCCTGGAGCAGCTCATTCCATAAGGATGAAAAAATTCAGTCTCAAACTGTCCCTGTGAAGTGTTTTGATACACCCCTTGCGGAAGACAAATTGACTTGTGCAAAGGAGGAGGTTAAAGATATAGTGATGTTTGATGCTGCCTCTGCTGAGAATAAAGTTCCTGAAACCCTATCTACTGGAAAAGAGAAAAATAATGCATCAAAAACAATATGTGTTAGAAATTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGACTGCATGTGGATGTTGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTATTGAACCGTCCCATCAAAGTTGGTACAGCTTCAGAAGATGGTGAATGTTTCCCGAATAGAGGCAGCTCGAGCATCTCATTCCAGAAGGCCGAAAGTTTTCAGTCTCTAACTGTATTTGTGATTGGATTTGATACATCCGTTCCAGAAGACAAGATAAAAGCTAGCCTGTATAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCATTACCAAAATTTCCTGATTCTGGTACTGTTAAGGGGTTTGCACATTTGGACTTCAAGGATTCTGATGGCTATAACAAAGCACTACAACTTAATAAAACTGCGATTGGAAATTTTTGGTTGTCAGTTGAAAAAGCAAAGCCAAGGATAAGACGTGATAGTTATGGTATAGGTGGTGGCAGAGGTGGGTATCACGTTGGTGGTAGGGATGGAGAAGACTATGGCGGGAGAACTGGTTGGGGCAGAAGTCATGGTGCAGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA | 1923 | 0.4108 | MANKSESEVCDDAIPPPKICKRECEDEDQEEVITKKQKRDDEVVVKQENEEEINPDYCEHDNKLEAENESATGCGNLESLDDGISDSDSHRSSGEDNPEDLESPEYNEEEIEEKVSKTPQERHETPDTLNGKYAESKTIYVRNLSYSVERADMEDIFKDCGEVVDVRFNTDPEGRFRGFGHVEFGTAEAAQKALELDDTELLNRRIKVGIAVQKSEYPPYKSNLSSSFNKGGNLQSHTVKGFDASLVENKPKSPATPNETNGASKTIYVRNLAYSVERPDMENLFKDCGEIVDVRLHTDRDGNFKGYGHVQFATAEAAQKALAFNKKVFFKRLMFVGLALERGKYSPNRSSWSWSSSFHKDEKIQSQTVPVKCFDTPLAEDKLTCAKEEVKDIVMFDAASAENKVPETLSTGKEKNNASKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEKALELDNTRLLNRPIKVGTASEDGECFPNRGSSSISFQKAESFQSLTVFVIGFDTSVPEDKIKASLYKHFCSCGEITRISLPKFPDSGTVKGFAHLDFKDSDGYNKALQLNKTAIGNFWLSVEKAKPRIRRDSYGIGGGRGGYHVGGRDGEDYGGRTGWGRSHGAGRHWTANTEHW | 640 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01413 | 640 | MobiDBLite | consensus disorder prediction | 15 | 67 | - | - | |
Trre2g01413 | 640 | SUPERFAMILY | RNA-binding domain, RBD | 505 | 620 | IPR035979 | GO:0003676 | |
Trre2g01413 | 640 | MobiDBLite | consensus disorder prediction | 83 | 98 | - | - | |
Trre2g01413 | 640 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 213 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | Gene3D | - | 230 | 351 | IPR012677 | - | |
Trre2g01413 | 640 | Gene3D | - | 380 | 490 | IPR012677 | - | |
Trre2g01413 | 640 | SUPERFAMILY | RNA-binding domain, RBD | 254 | 352 | IPR035979 | GO:0003676 | |
Trre2g01413 | 640 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 265 | 341 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 510 | 591 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 402 | 555 | - | - | |
Trre2g01413 | 640 | SUPERFAMILY | RNA-binding domain, RBD | 130 | 231 | IPR035979 | GO:0003676 | |
Trre2g01413 | 640 | MobiDBLite | consensus disorder prediction | 110 | 129 | - | - | |
Trre2g01413 | 640 | Gene3D | - | 492 | 629 | IPR012677 | - | |
Trre2g01413 | 640 | SUPERFAMILY | RNA-binding domain, RBD | 415 | 493 | IPR035979 | GO:0003676 | |
Trre2g01413 | 640 | SMART | rrm1_1 | 511 | 587 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | SMART | rrm1_1 | 138 | 209 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | SMART | rrm1_1 | 266 | 337 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | SMART | rrm1_1 | 421 | 482 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | MobiDBLite | consensus disorder prediction | 1 | 129 | - | - | |
Trre2g01413 | 640 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 420 | 486 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 521 | 581 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 267 | 332 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 422 | 480 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 207 | IPR000504 | GO:0003723 | |
Trre2g01413 | 640 | Gene3D | - | 100 | 225 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01413 | Trre-Chr2 | 11341212 | 11351955 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01413 | 120 | 339 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 28.889 | 1.17e-14 | 74.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01413 | - | - | tpra:123897326 | 1090.49 |