Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01413 ATGGCCAATAAATCTGAATCCGAAGTGTGTGATGATGCAATTCCACCTCCAAAAATTTGCAAAAGAGAGTGTGAGGATGAAGATCAGGAGGAAGTGATTACAAAGAAGCAGAAGAGAGATGATGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATTATTGTGAACATGATAATAAACTTGAAGCTGAAAACGAATCGGCTACTGGTTGTGGTAATTTGGAATCATTGGATGATGGTATCTCAGATTCTGACTCTCACAGAAGCTCTGGTGAGGATAATCCTGAAGATTTGGAGAGTCCGGAGTACAATGAGGAAGAAATAGAGGAAAAAGTTTCCAAAACACCTCAGGAAAGGCATGAAACCCCAGACACTCTAAACGGAAAATATGCTGAATCAAAGACAATATATGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGATTCAACACAGATCCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAAGCCCTTGAATTGGATGATACAGAATTATTGAATCGTCGCATCAAAGTTGGTATAGCTGTACAAAAGAGTGAATATCCCCCCTATAAAAGCAACTTGAGCAGCTCATTCAATAAGGGTGGAAATCTTCAATCACACACCGTAAAGGGGTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAATGGTGCATCAAAGACCATATATGTCAGAAACTTGGCATACTCCGTGGAACGACCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGATCGCGACGGGAACTTTAAAGGCTATGGACATGTTCAGTTTGCCACAGCAGAAGCAGCACAGAAGGCTCTTGCGTTCAATAAGAAAGTATTTTTTAAGCGTCTTATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATTCCCCTAATAGAAGCAGCTGGTCCTGGAGCAGCTCATTCCATAAGGATGAAAAAATTCAGTCTCAAACTGTCCCTGTGAAGTGTTTTGATACACCCCTTGCGGAAGACAAATTGACTTGTGCAAAGGAGGAGGTTAAAGATATAGTGATGTTTGATGCTGCCTCTGCTGAGAATAAAGTTCCTGAAACCCTATCTACTGGAAAAGAGAAAAATAATGCATCAAAAACAATATGTGTTAGAAATTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGACTGCATGTGGATGTTGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTATTGAACCGTCCCATCAAAGTTGGTACAGCTTCAGAAGATGGTGAATGTTTCCCGAATAGAGGCAGCTCGAGCATCTCATTCCAGAAGGCCGAAAGTTTTCAGTCTCTAACTGTATTTGTGATTGGATTTGATACATCCGTTCCAGAAGACAAGATAAAAGCTAGCCTGTATAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCATTACCAAAATTTCCTGATTCTGGTACTGTTAAGGGGTTTGCACATTTGGACTTCAAGGATTCTGATGGCTATAACAAAGCACTACAACTTAATAAAACTGCGATTGGAAATTTTTGGTTGTCAGTTGAAAAAGCAAAGCCAAGGATAAGACGTGATAGTTATGGTATAGGTGGTGGCAGAGGTGGGTATCACGTTGGTGGTAGGGATGGAGAAGACTATGGCGGGAGAACTGGTTGGGGCAGAAGTCATGGTGCAGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA 1923 0.4108 MANKSESEVCDDAIPPPKICKRECEDEDQEEVITKKQKRDDEVVVKQENEEEINPDYCEHDNKLEAENESATGCGNLESLDDGISDSDSHRSSGEDNPEDLESPEYNEEEIEEKVSKTPQERHETPDTLNGKYAESKTIYVRNLSYSVERADMEDIFKDCGEVVDVRFNTDPEGRFRGFGHVEFGTAEAAQKALELDDTELLNRRIKVGIAVQKSEYPPYKSNLSSSFNKGGNLQSHTVKGFDASLVENKPKSPATPNETNGASKTIYVRNLAYSVERPDMENLFKDCGEIVDVRLHTDRDGNFKGYGHVQFATAEAAQKALAFNKKVFFKRLMFVGLALERGKYSPNRSSWSWSSSFHKDEKIQSQTVPVKCFDTPLAEDKLTCAKEEVKDIVMFDAASAENKVPETLSTGKEKNNASKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEKALELDNTRLLNRPIKVGTASEDGECFPNRGSSSISFQKAESFQSLTVFVIGFDTSVPEDKIKASLYKHFCSCGEITRISLPKFPDSGTVKGFAHLDFKDSDGYNKALQLNKTAIGNFWLSVEKAKPRIRRDSYGIGGGRGGYHVGGRDGEDYGGRTGWGRSHGAGRHWTANTEHW 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01413 640 MobiDBLite consensus disorder prediction 15 67 - -
Trre2g01413 640 SUPERFAMILY RNA-binding domain, RBD 505 620 IPR035979 GO:0003676
Trre2g01413 640 MobiDBLite consensus disorder prediction 83 98 - -
Trre2g01413 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 213 IPR000504 GO:0003723
Trre2g01413 640 Gene3D - 230 351 IPR012677 -
Trre2g01413 640 Gene3D - 380 490 IPR012677 -
Trre2g01413 640 SUPERFAMILY RNA-binding domain, RBD 254 352 IPR035979 GO:0003676
Trre2g01413 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 341 IPR000504 GO:0003723
Trre2g01413 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 510 591 IPR000504 GO:0003723
Trre2g01413 640 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 402 555 - -
Trre2g01413 640 SUPERFAMILY RNA-binding domain, RBD 130 231 IPR035979 GO:0003676
Trre2g01413 640 MobiDBLite consensus disorder prediction 110 129 - -
Trre2g01413 640 Gene3D - 492 629 IPR012677 -
Trre2g01413 640 SUPERFAMILY RNA-binding domain, RBD 415 493 IPR035979 GO:0003676
Trre2g01413 640 SMART rrm1_1 511 587 IPR000504 GO:0003723
Trre2g01413 640 SMART rrm1_1 138 209 IPR000504 GO:0003723
Trre2g01413 640 SMART rrm1_1 266 337 IPR000504 GO:0003723
Trre2g01413 640 SMART rrm1_1 421 482 IPR000504 GO:0003723
Trre2g01413 640 MobiDBLite consensus disorder prediction 1 129 - -
Trre2g01413 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 486 IPR000504 GO:0003723
Trre2g01413 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 521 581 IPR000504 GO:0003723
Trre2g01413 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 332 IPR000504 GO:0003723
Trre2g01413 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 480 IPR000504 GO:0003723
Trre2g01413 640 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 207 IPR000504 GO:0003723
Trre2g01413 640 Gene3D - 100 225 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01413 Trre-Chr2 11341212 11351955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01413 120 339 Eukaryotic Initiation Factors Gene Family AT1G34140 28.889 1.17e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01413 - - tpra:123897326 1090.49