Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g01410 | ATGGCCAATAAATCTGAATCCGAAGTGTGTGATGATGCAATTCCACCTCCAAAAATTTGCAAAAGAGAGTGTGAGGATGAAGATCAGGAGGAAGTGATTACAAAGAAGCAGAAGAGAGATGATGAGGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATTATTGTGAACATGATAATAAACTTGAAGCTGAAAACGAATCGGCTACTGGTTGTGGTAATTTGGAATCATTGGATGATGGTATCTCAGATTCTGACTCTCACAGAAGCTCTGGTGAGGATAATCCTGAAGATTTGGAGAGTCCGGAGTACAATGAGGAAGAAATAGAGGAAAAAGTTTCCAAAACACCTCAGGAAAGGCATGAAACCCCAGACACTCTAAACGGAAAATATGCTGAATCAAAGACAATATATGTTAGAAACCTGTCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGATTCAACACAGATCCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAAGCCCTTGAATTGGATGATACAGAATTATTGAATCGTCGCATCAAAGTTGGTATAGCTGTACAAAAGAGTGAATATCCCCCCTATAAAAGCAACTTGAGCAGCTCATTCAATAAGGGTGGAAATCTTCAATCACACACCGTAAAGGGGTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAATGGTGCATCAAAGACCATATATGTCAGAAACTTGGCATACTCCGTGGAACGACCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGATCGCGACGGGAACTTTAAAGGCTATGGACATGTTCAGTTTGCCACAGCAGAAGCAGCACAGAAGGCTCTTGCGTTCAATAAGAAAGTATTTTTTAAGCGTCTTATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATTCCCCTAATAGAAGCAGCTGGTCCTGGAGCAGCTCATTCCATAAGGATGAAAAAATTCAGTCTCAAACTGTCCCTGTGAAGTGTTTTGATACACCCCTTGCGGAAGACAAATTGACTTGTGCAAAGGAGGAGGTTAAAGATATAGTGATGTTTGATGCTGCCTCTGCTGAGAATAAACCTGAAACCCTATCTACTGGAAAAGAGAAAAATAATGCATCAAAAACAATATGTGTTAGAAATTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGACTGCATGTGGATGTTGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTATTGAACCGTCCCATCAAAGTTGGTACAGCTTCAGAAGATGGTGAATGTTTCCCGAATAGAGGCTCGAGCATCTCATTCCAGAAGGCCGAAAGTTTTCAGTCTCTAACTGTATTTGTGATTGGATTTGATACATCCGTTCCAGAAGACAAGATAAAAGCTAGCCTGTATAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCATTACCAAAATTTCCTGATTCTGGTACTGTTAAGGGGTTTGCACATTTGGACTTCAAGGATTCTGATGGCTATAACAAAGCACTACAACTTAATAAAACTGCGATTGGAAATTTTTGGTTGTCAGTTGAAAAAGCAAAGCCAAGGATAAGACGTGATAGTTATGGTATAGGTGGTGGCAGAGGTGGGTATCACGTTGGTGGTAGGGATGGAGAAGACTATGGCGGGAGAACTGGTTGGGGCAGAAGTCATGGTGCAGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA | 1917 | 0.4105 | MANKSESEVCDDAIPPPKICKRECEDEDQEEVITKKQKRDDEVVVKQENEEEINPDYCEHDNKLEAENESATGCGNLESLDDGISDSDSHRSSGEDNPEDLESPEYNEEEIEEKVSKTPQERHETPDTLNGKYAESKTIYVRNLSYSVERADMEDIFKDCGEVVDVRFNTDPEGRFRGFGHVEFGTAEAAQKALELDDTELLNRRIKVGIAVQKSEYPPYKSNLSSSFNKGGNLQSHTVKGFDASLVENKPKSPATPNETNGASKTIYVRNLAYSVERPDMENLFKDCGEIVDVRLHTDRDGNFKGYGHVQFATAEAAQKALAFNKKVFFKRLMFVGLALERGKYSPNRSSWSWSSSFHKDEKIQSQTVPVKCFDTPLAEDKLTCAKEEVKDIVMFDAASAENKPETLSTGKEKNNASKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEKALELDNTRLLNRPIKVGTASEDGECFPNRGSSISFQKAESFQSLTVFVIGFDTSVPEDKIKASLYKHFCSCGEITRISLPKFPDSGTVKGFAHLDFKDSDGYNKALQLNKTAIGNFWLSVEKAKPRIRRDSYGIGGGRGGYHVGGRDGEDYGGRTGWGRSHGAGRHWTANTEHW | 638 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g01410 | 638 | MobiDBLite | consensus disorder prediction | 15 | 67 | - | - | |
| Trre2g01410 | 638 | MobiDBLite | consensus disorder prediction | 83 | 98 | - | - | |
| Trre2g01410 | 638 | Gene3D | - | 492 | 627 | IPR012677 | - | |
| Trre2g01410 | 638 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 213 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 508 | 589 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | SUPERFAMILY | RNA-binding domain, RBD | 414 | 496 | IPR035979 | GO:0003676 | |
| Trre2g01410 | 638 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 265 | 341 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 421 | 479 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 267 | 332 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 519 | 579 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 207 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | Gene3D | - | 230 | 351 | IPR012677 | - | |
| Trre2g01410 | 638 | Gene3D | - | 380 | 489 | IPR012677 | - | |
| Trre2g01410 | 638 | SMART | rrm1_1 | 509 | 585 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | SMART | rrm1_1 | 138 | 209 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | SMART | rrm1_1 | 420 | 481 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | SMART | rrm1_1 | 266 | 337 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | SUPERFAMILY | RNA-binding domain, RBD | 130 | 231 | IPR035979 | GO:0003676 | |
| Trre2g01410 | 638 | MobiDBLite | consensus disorder prediction | 110 | 129 | - | - | |
| Trre2g01410 | 638 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 419 | 485 | IPR000504 | GO:0003723 | |
| Trre2g01410 | 638 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 252 | 342 | - | - | |
| Trre2g01410 | 638 | MobiDBLite | consensus disorder prediction | 1 | 129 | - | - | |
| Trre2g01410 | 638 | SUPERFAMILY | RNA-binding domain, RBD | 503 | 618 | IPR035979 | GO:0003676 | |
| Trre2g01410 | 638 | SUPERFAMILY | RNA-binding domain, RBD | 254 | 352 | IPR035979 | GO:0003676 | |
| Trre2g01410 | 638 | Gene3D | - | 100 | 225 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g01410 | Trre-Chr2 | 11341212 | 11351955 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g01410 | 120 | 339 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 28.889 | 1.10e-14 | 74.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g01410 | - | - | tpra:123897326 | 1088.94 |