Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01409 ATGTCTTTACCAACTGATCCCGACTATTTAAACAAATCCGACAATGCATGGCAACTAGTCGCGGCCACATTTGTCGGTCTCCAAAGTGTTCCGGGACTAATAATATTATATGGTGGAGCGGTTAAAAAAAAATGGGCAGTGAATTCAGCATTCATGTCACTCTATGCATTTGCTTGTGTATTTCTTTGTTGGGTTATTTGGGGTTATAGATTATCATTTGGTGATCAACTTTTGCCATTTTGGGGAAAACCAGCACTTGCACTTGATGAAGTTTATCTTTTTAAAAAAGCATTTTCAGGGAATTTTCCAAATGCTACTATGATTTATTTTCAAGGTGTTTTTGCTGCTATTACTTTGATTTTGATAGCTGGTGCTGTGTTGGGGAGAATGAACTTCTATGCTTGGATGTTGTTTGTGCCTTTATGGCTCACTTTTTCTTATACTTTTACTGCTTTTAGTATTTGGAGTCCAAATGGCTTTTTGACTAAGTTGGGGATTATTGATTACTCTGGTGGTTATGTTATTCATTTGTCTTCTGGTGTTGCTGGTTTCACTGCTGCATATTGGGTTGGACCGCGTCTAAACAAGGACAGGGAAAGGTTTCCACCAAACAACCTCCTTCTCATGCTCGCCGGAGCAGGGCTTTTATGGATGGGATGGACAGGATTCAATGGAGGAGATCCTTACTCAGTTGGAATAGATGCTTCTTTGGCTGTCTTGAACACACATGCTTGTACTGCTACTAGCTTGCTTACTTGGGTTTTACTTGATGTCATCTTTTTTAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTAGTTTGCATTACCCCTGCTGCAGGAGTTGTACAAGGATGGGCAGCCCTTATAATGGGAGTATTCTCTGGCTCAATTCCATGGTTTACTATGATGGTAATCCACAAAAGATCAAAGTTACTTCAAAAGGTAGATGACACAATGGCAGTGTTACATACTCATGCAATCGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTCTTTGCTGAGCCAAAATTGAATGCATTGTTCTATGGTGCTTATAATAAATATGTTGGTTTATTTTATGGATTACAAATGAACATGGCTAAAACTGGATTTAGACAAATTGGAATCCAATTAATTGGAATTTTGTTTGTTATATTTGTTAATGTTGTAAGTACAAGTTTGATATGTCTCTTCATTCGTATTTTCGTTCCATTGAGAATGTCAGAAGAGGATATGGAAATTGGTGACGAAGCTGCTCATGGTGAAGAAGCTTATGCAATTTGGGGTCAAGGTGATAAACTTGAAAATCCAAGTTCAAAATATGGAAGTTCTATGTATGAAGATGTTGAAGTTGCCACCGCGACTAAGAACAAGCGCGGTAGCCAGATTGAGATGATGTAA 1416 0.387 MSLPTDPDYLNKSDNAWQLVAATFVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFLCWVIWGYRLSFGDQLLPFWGKPALALDEVYLFKKAFSGNFPNATMIYFQGVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLTKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGIDASLAVLNTHACTATSLLTWVLLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNALFYGAYNKYVGLFYGLQMNMAKTGFRQIGIQLIGILFVIFVNVVSTSLICLFIRIFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENPSSKYGSSMYEDVEVATATKNKRGSQIEMM 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01409 471 ProSitePatterns Ammonium transporters signature. 168 193 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre2g01409 471 PANTHER AMMONIUM TRANSPORTER MEP2 6 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre2g01409 471 NCBIfam ammonium transporter 14 430 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre2g01409 471 Gene3D Ammonium transporter AmtB like domains 4 434 IPR029020 -
Trre2g01409 471 Pfam Ammonium Transporter Family 16 430 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre2g01409 471 FunFam Ammonium transporter 1 433 - -
Trre2g01409 471 PRINTS Rhesus blood group protein signature 111 127 IPR002229 GO:0005886
Trre2g01409 471 PRINTS Rhesus blood group protein signature 207 225 IPR002229 GO:0005886
Trre2g01409 471 PRINTS Rhesus blood group protein signature 238 260 IPR002229 GO:0005886
Trre2g01409 471 SUPERFAMILY Ammonium transporter 9 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01409 Trre-Chr2 11336481 11339237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01409 105 468 Inorganic Solute Cotransporters AT2G38290 61.202 1.40e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01409 K03320 - gmx:100787856 814.298