Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01407 ATGCCTCCACGGATGATACGAACAGGAAGACAATCGGTGGACAATAATCGTCTTCGTGTACTAGAGATTTTTCGACAGGGAGGATCATCATCTAATCATCTTGCTAAAGATGATGTTATTGAAAATTCACATAGGGACTTTTCTCAGAGTAAAAACAATTCAGTTGAGCCTAAAAACAAAGCATCTGAGCCTCCAAAAGAGGATGTCTTTATTTGTCCAATATGCATGGATCCTTTAGTAGAGGAAATGTCAACAAGGTGTGGCCACATTTTTTGCAAGAAGTGCATCACAATTGCAATAGCTTCAAAGAGTACATGCCCTACTTGTAGAAAAAATGTTTCTATGAAACAACTAATAAGGGTGTTTCTTTCATCATCCACTTGA 384 0.3776 MPPRMIRTGRQSVDNNRLRVLEIFRQGGSSSNHLAKDDVIENSHRDFSQSKNNSVEPKNKASEPPKEDVFICPICMDPLVEEMSTRCGHIFCKKCITIAIASKSTCPTCRKNVSMKQLIRVFLSSST 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01407 127 MobiDBLite consensus disorder prediction 42 65 - -
Trre2g01407 127 SMART ring_2 72 109 IPR001841 -
Trre2g01407 127 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Trre2g01407 127 ProSiteProfiles Zinc finger RING-type profile. 72 110 IPR001841 -
Trre2g01407 127 SUPERFAMILY RING/U-box 71 116 - -
Trre2g01407 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 126 IPR013083 -
Trre2g01407 127 PANTHER ELFLESS, ISOFORM B 25 124 - -
Trre2g01407 127 Pfam Zinc finger, C3HC4 type (RING finger) 72 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01407 Trre-Chr2 11325860 11326404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01407 42 126 C3H Transcription Factor Family AT3G07200 48.889 3.51e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01407 K22651 - cave:132188663 110.923