Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01407 | ATGCCTCCACGGATGATACGAACAGGAAGACAATCGGTGGACAATAATCGTCTTCGTGTACTAGAGATTTTTCGACAGGGAGGATCATCATCTAATCATCTTGCTAAAGATGATGTTATTGAAAATTCACATAGGGACTTTTCTCAGAGTAAAAACAATTCAGTTGAGCCTAAAAACAAAGCATCTGAGCCTCCAAAAGAGGATGTCTTTATTTGTCCAATATGCATGGATCCTTTAGTAGAGGAAATGTCAACAAGGTGTGGCCACATTTTTTGCAAGAAGTGCATCACAATTGCAATAGCTTCAAAGAGTACATGCCCTACTTGTAGAAAAAATGTTTCTATGAAACAACTAATAAGGGTGTTTCTTTCATCATCCACTTGA | 384 | 0.3776 | MPPRMIRTGRQSVDNNRLRVLEIFRQGGSSSNHLAKDDVIENSHRDFSQSKNNSVEPKNKASEPPKEDVFICPICMDPLVEEMSTRCGHIFCKKCITIAIASKSTCPTCRKNVSMKQLIRVFLSSST | 127 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01407 | 127 | MobiDBLite | consensus disorder prediction | 42 | 65 | - | - | |
Trre2g01407 | 127 | SMART | ring_2 | 72 | 109 | IPR001841 | - | |
Trre2g01407 | 127 | ProSitePatterns | Zinc finger RING-type signature. | 87 | 96 | IPR017907 | - | |
Trre2g01407 | 127 | ProSiteProfiles | Zinc finger RING-type profile. | 72 | 110 | IPR001841 | - | |
Trre2g01407 | 127 | SUPERFAMILY | RING/U-box | 71 | 116 | - | - | |
Trre2g01407 | 127 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 126 | IPR013083 | - | |
Trre2g01407 | 127 | PANTHER | ELFLESS, ISOFORM B | 25 | 124 | - | - | |
Trre2g01407 | 127 | Pfam | Zinc finger, C3HC4 type (RING finger) | 72 | 109 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01407 | Trre-Chr2 | 11325860 | 11326404 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01407 | 42 | 126 | C3H Transcription Factor Family | AT3G07200 | 48.889 | 3.51e-23 | 87.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01407 | K22651 | - | cave:132188663 | 110.923 |