Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01406 ATGAGTTCTTTGAATTTGAAGAATAACCTACAAAGGCAGACAACATTACCTCCTCCAAAGGACCCTTCAAATGAAGCCGGACCCTCTGAATTACCACTTCATGTTATTGATTTTGAGGATCCTGATGATGACATAATTGAAATTTCACAAACAGCTTTTCTTGAGGGATCCGGCAATTCGAGGAGAACTCGGAGGACAATTGAAAATGAGTTGAATATAGAAAATCAAGATAACTCAACATCTTTTTTGCCTGAGGGAACCCTTATCAATCCAAAGGAGGATGTTTTTATAAATTTTGATCCCAATATGGAGAAGGAAGCATATGAGCCTAAGTCTGAATTTCACTGCCCTATATGTATGGATCCTTTGGTGGAGGAAATGTCAACAAAGTGTGGCCATATATTTTGCAAGAAATGCATAAAAAAGGCAATAGCTTCACAGGGTGGTAAATGCCCTACATGTAGGAAAAAGGTTACATCAGCACAATTAATAAGGGTCTTTCTTTCATCTCCTAATTGA 519 0.3776 MSSLNLKNNLQRQTTLPPPKDPSNEAGPSELPLHVIDFEDPDDDIIEISQTAFLEGSGNSRRTRRTIENELNIENQDNSTSFLPEGTLINPKEDVFINFDPNMEKEAYEPKSEFHCPICMDPLVEEMSTKCGHIFCKKCIKKAIASQGGKCPTCRKKVTSAQLIRVFLSSPN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01406 172 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Trre2g01406 172 SMART ring_2 116 154 IPR001841 -
Trre2g01406 172 MobiDBLite consensus disorder prediction 1 31 - -
Trre2g01406 172 ProSiteProfiles Zinc finger RING-type profile. 116 155 IPR001841 -
Trre2g01406 172 PANTHER ELFLESS, ISOFORM B 14 169 - -
Trre2g01406 172 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g01406 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 169 IPR013083 -
Trre2g01406 172 SUPERFAMILY RING/U-box 110 167 - -
Trre2g01406 172 Pfam Zinc finger, C3HC4 type (RING finger) 116 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01406 Trre-Chr2 11300242 11302267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01406 28 168 C3H Transcription Factor Family AT5G48655 43.125 6.11e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01406 K22651 - zju:107426716 109.768