Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01406 | ATGAGTTCTTTGAATTTGAAGAATAACCTACAAAGGCAGACAACATTACCTCCTCCAAAGGACCCTTCAAATGAAGCCGGACCCTCTGAATTACCACTTCATGTTATTGATTTTGAGGATCCTGATGATGACATAATTGAAATTTCACAAACAGCTTTTCTTGAGGGATCCGGCAATTCGAGGAGAACTCGGAGGACAATTGAAAATGAGTTGAATATAGAAAATCAAGATAACTCAACATCTTTTTTGCCTGAGGGAACCCTTATCAATCCAAAGGAGGATGTTTTTATAAATTTTGATCCCAATATGGAGAAGGAAGCATATGAGCCTAAGTCTGAATTTCACTGCCCTATATGTATGGATCCTTTGGTGGAGGAAATGTCAACAAAGTGTGGCCATATATTTTGCAAGAAATGCATAAAAAAGGCAATAGCTTCACAGGGTGGTAAATGCCCTACATGTAGGAAAAAGGTTACATCAGCACAATTAATAAGGGTCTTTCTTTCATCTCCTAATTGA | 519 | 0.3776 | MSSLNLKNNLQRQTTLPPPKDPSNEAGPSELPLHVIDFEDPDDDIIEISQTAFLEGSGNSRRTRRTIENELNIENQDNSTSFLPEGTLINPKEDVFINFDPNMEKEAYEPKSEFHCPICMDPLVEEMSTKCGHIFCKKCIKKAIASQGGKCPTCRKKVTSAQLIRVFLSSPN | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01406 | 172 | ProSitePatterns | Zinc finger RING-type signature. | 131 | 140 | IPR017907 | - | |
Trre2g01406 | 172 | SMART | ring_2 | 116 | 154 | IPR001841 | - | |
Trre2g01406 | 172 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Trre2g01406 | 172 | ProSiteProfiles | Zinc finger RING-type profile. | 116 | 155 | IPR001841 | - | |
Trre2g01406 | 172 | PANTHER | ELFLESS, ISOFORM B | 14 | 169 | - | - | |
Trre2g01406 | 172 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Trre2g01406 | 172 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 169 | IPR013083 | - | |
Trre2g01406 | 172 | SUPERFAMILY | RING/U-box | 110 | 167 | - | - | |
Trre2g01406 | 172 | Pfam | Zinc finger, C3HC4 type (RING finger) | 116 | 154 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01406 | Trre-Chr2 | 11300242 | 11302267 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01406 | 28 | 168 | C3H Transcription Factor Family | AT5G48655 | 43.125 | 6.11e-31 | 109 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01406 | K22651 | - | zju:107426716 | 109.768 |