Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01401 ATGTCAGAATCAAACGCCATAGCAAATGGTTTAGCTGGTGCTGGTGGTGGAATTATTGCTCAAATATTAACTTATCCACTTCAAGCTGTTAATACACGCCAACAAACTGAGAGAACACTTAAGAGGAACAAGCAAAGTTTGCTTCCTCAATCTTCCAACACAACAACCACTGCTTCTTCTTCTCCTGGATTTTTTATTCAGATATTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTTTATAGTGGCCTTAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGAATTTACTACTTCTTCTATCAAATTTTCAAGAACAAGGCTGTGGCTATTGCAGCAGCAAGGAAAGTCAAAGGGTATGGAGATGGTACTGTTGGAATGTTTGGTTGGCTCGTTGTAGCTGCTATTGCAGGGTCCTTGAATGTTCTGTTCACAAACCCAATTTGGGTTCTGGTGACACGAATGCAGACACATAATCAAGCAGAAAGAAAAATCATGGAGGAAAAGAAAGAAGTGTTAAGGAAGGCTGCTTCTGAAAGCATGTTAGCAGGTTCAACATTGGAAGACAGATTAGAAGAACTAAATTCTACAAAACCTAAACCATTTGGGACTATACACGCAGCTAATGAAGTATATAATGAAGCTGGTATAGTTGGATTTTGGAAAGGTGTCATCCCTGCTCTTATTATGGTATGCAATCCATCTATCCAGTTTATGATTTATGAGAGTTCATTAAAGCGTCTAAGGGCGAAACGTTCTGCTAAGAAGCAGGGAGATACAAGTATAACTGCTTTGGAGGTCTTTGTCGTGGGAGCGATAGCAAAACTTGGAGCTACTGTCACAACATACCCTTTGCTAGTTGTTAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAGTAACTCGTTAAGATATTCAGGTACATTTGATGCAATTCTTAAAATGATCCGTTATGAAGGATTGCCTGGTTTTTACAAGGGCATGAGCACAAAGATAGTACAGAGTGTATTTGCTGCTTCTGTATTATTCATGGTAAAGGAGGAGCTTGTTAAGGCTATCATGATTCTTGCAAATAAAAGCAAAAAAGTTGTATTAAATTTAAGTAGTTAA 1116 0.3907 MSESNAIANGLAGAGGGIIAQILTYPLQAVNTRQQTERTLKRNKQSLLPQSSNTTTTASSSPGFFIQIFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQIFKNKAVAIAAARKVKGYGDGTVGMFGWLVVAAIAGSLNVLFTNPIWVLVTRMQTHNQAERKIMEEKKEVLRKAASESMLAGSTLEDRLEELNSTKPKPFGTIHAANEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLKRLRAKRSAKKQGDTSITALEVFVVGAIAKLGATVTTYPLLVVKSRLQAKQEIGGSNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAIMILANKSKKVVLNLSS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01401 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 108 IPR018108 -
Trre2g01401 371 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 5 358 IPR044712 GO:0006862|GO:0055085
Trre2g01401 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 248 IPR018108 -
Trre2g01401 371 SUPERFAMILY Mitochondrial carrier 5 350 IPR023395 -
Trre2g01401 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 263 354 IPR018108 -
Trre2g01401 371 Gene3D Mitochondrial carrier domain 1 188 IPR023395 -
Trre2g01401 371 Gene3D Mitochondrial carrier domain 189 370 IPR023395 -
Trre2g01401 371 Pfam Mitochondrial carrier protein 126 249 IPR018108 -
Trre2g01401 371 Pfam Mitochondrial carrier protein 4 107 IPR018108 -
Trre2g01401 371 Pfam Mitochondrial carrier protein 263 355 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01401 Trre-Chr2 11248516 11253445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01401 26 355 Chloroplast and Mitochondria Gene Families AT2G47490 29.290 3.40e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01401 K13354 - gmx:100777898 594.349