Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01381 ATGGTTAAGAAGGCTAAAGAAAGCCCATTAACGGAAACTGTTAATGAGAGAGCCAACAATGAGAATCCATGGTTTCAACTTAAATTGTCACCATGTTATGCCCATGGTACTTTCATGAAAATACCAAGTGAGTTTTCAAGAGAATACTTGAACAAGTTTAAAGGGATTGCAACCATAAGTGTTGGTGGGGACATGGCTATGAAAGTGAAGATGAAGTTTGATAATATTTATAGAAGATCCATTATAACTACTGGTTGGAATTTGTTTAACCAAAGATATAACTTACAAGCTAATGATATATGTTACTTTGAGATGATTCAGCTCAAACCACCTTCATTCTCTGTTTCTATTTTTCGAGCAATAGAGGACTCAAGCCCTAAGAAGTTGCAAGATTCAGAAGGTGATAATGTGATTAAACCTAAGACATTCAAGATTCTTGTGAATGCCTCATACCCGAACATACCAAATGAATTTTTTAATAGACATATTGAATGTCATGGAAAATTTGTGGAGATTAAAGTGGACAAAAAGTCATGGTTTGTAAAAGTGAACTATTATCCTAGAGGTAGTAGATTCTGTTCAGGTTGGAGAAAATTTATGGAAGATTGCAAATTGGAGATTGGAGACACTTGTGTCTTTGAGTTGATTCATGAGAAAAAATTTGTGTTTGTAGTTTCATTTGTAAGGAAGAAACAATGTGGTATTTGA 708 0.339 MVKKAKESPLTETVNERANNENPWFQLKLSPCYAHGTFMKIPSEFSREYLNKFKGIATISVGGDMAMKVKMKFDNIYRRSIITTGWNLFNQRYNLQANDICYFEMIQLKPPSFSVSIFRAIEDSSPKKLQDSEGDNVIKPKTFKILVNASYPNIPNEFFNRHIECHGKFVEIKVDKKSWFVKVNYYPRGSRFCSGWRKFMEDCKLEIGDTCVFELIHEKKFVFVVSFVRKKQCGI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01381 235 SUPERFAMILY DNA-binding pseudobarrel domain 147 233 IPR015300 -
Trre2g01381 235 CDD B3_DNA 140 229 IPR003340 GO:0003677
Trre2g01381 235 Pfam B3 DNA binding domain 33 120 IPR003340 GO:0003677
Trre2g01381 235 Pfam B3 DNA binding domain 154 230 IPR003340 GO:0003677
Trre2g01381 235 CDD B3_DNA 25 119 IPR003340 GO:0003677
Trre2g01381 235 ProSiteProfiles B3 DNA-binding domain profile. 24 121 IPR003340 GO:0003677
Trre2g01381 235 SMART B3_2 142 231 IPR003340 GO:0003677
Trre2g01381 235 SMART B3_2 25 121 IPR003340 GO:0003677
Trre2g01381 235 SUPERFAMILY DNA-binding pseudobarrel domain 19 119 IPR015300 -
Trre2g01381 235 Gene3D - 3 123 IPR015300 -
Trre2g01381 235 Gene3D - 128 232 IPR015300 -
Trre2g01381 235 ProSiteProfiles B3 DNA-binding domain profile. 137 231 IPR003340 GO:0003677
Trre2g01381 235 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 140 230 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01381 Trre-Chr2 11047163 11049692 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01381 131 226 B3 DNA Binding Superfamily AT5G18090 30.693 1.38e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01381 B3 1.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01381 - - psat:127094583 263.077