Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01380 ATGTCATTTCATCCCCCAGAATTTTTTAAGATAATGCATAACCATGAAGAGGAGCTTAGGCTTCCCAAGAACTTTGTGGAGAAATATTGGAAAGGAATATCAAATCCTGTAGTCCTTAGCCTCCCAAATGGTGCTCAACAAAAAATATTTTGGGTGAAGTGTGATGGTAATATTTGGTTTCAAAAAAATTGGGAAAAAATTGCAAAGTTTCTAAAAGTTGGATATGCTGTAGTTTTTAAATATAAAGGTGGATCATATTTTAAGGTTAAGATATTTGGTGTCAATACATTGGAAATTGACTATTCCAATATAAAATTCATAGAAGATGAAATTTGTGAAGGTAAAGAAGTTGTTGAAGTGAGTGATAATAGTGGTAAGAATTTAGATGAGAGTGAAATATCCAAGTACAAGAAATGGCAAGAGAAAAATTACAATGGTGTTGAAACTACAAAAGAAGTTAAAGAATTTGTTGAAGTGGGTGATGAAAGTGACACTCCCACACAAACTCAAAGGAAAAAAATTGGCAAGAGAAAAATGAATGTAGATTTTGATGCTACACAGCAAAAAATCTTATGTGAGTTCATCTAA 588 0.318 MSFHPPEFFKIMHNHEEELRLPKNFVEKYWKGISNPVVLSLPNGAQQKIFWVKCDGNIWFQKNWEKIAKFLKVGYAVVFKYKGGSYFKVKIFGVNTLEIDYSNIKFIEDEICEGKEVVEVSDNSGKNLDESEISKYKKWQEKNYNGVETTKEVKEFVEVGDESDTPTQTQRKKIGKRKMNVDFDATQQKILCEFI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01380 195 CDD B3_DNA 6 92 IPR003340 GO:0003677
Trre2g01380 195 PANTHER B3 DOMAIN-CONTAINING 4 165 - -
Trre2g01380 195 Gene3D - 2 96 IPR015300 -
Trre2g01380 195 SMART B3_2 8 95 IPR003340 GO:0003677
Trre2g01380 195 SUPERFAMILY DNA-binding pseudobarrel domain 4 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01380 Trre-Chr2 11045984 11046675 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01380 6 182 B3 DNA Binding Superfamily AT3G18990 29.231 3.10e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01380 - - psat:127094583 187.193