Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01378 ATGTCATTTCAATATCGTCCCGATTTTAGAATAATATTGCATGATTCTAAGAAGCTTATGCTTCCCAAGACATATGTGGAGAAATATTGGGAAGGAATATCAAATCCAATATTCCTTAAATTCCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAACGTGATGGTGAAATTTGGTTTCAAAAAAATTGGGAAAATATTGCAAAGTTTTTGAAATATGGATATGTTTTAACATTTAAATACATAGTTGGATCATATTTTAAAGTTAAGATATTTGGTGTTAATGCTTTAGAGATAAACTATTCCAATATTATAAAATGTGTGAATGAAGAAGTTGTTGAAGATGTAGGTAAATATAAAGAAATTGTTGAAGTGAGTGATGAGAGTGAAGAAGAGAGTGATGATGAGTATGAAATTACAGCCATGAAACCTCGAATTAGGACAAGAAATGACAAGAGAAAATTTAATATGGATTTGGATACTACCCAACAAAAATTCTCAGGTAGTAACAATGTAGTCGTAAAGAAAGCTAAAAAATACCCAACAATTCTAGCTGGTGATGAGAGAGCCAACAATGAGAATCCCTCTTTTGAAGTTAAATTGACACCATCTTATGTCAATGGTAGTTTTTTGGGGATACCAACTAAGTTTTCAAGAGAATACTTGAATAAATTTGAAGGGACTGCAACCATAAGGGTTGGTGATGATGAAAAGACTATGGAAGTGAATGTGAGGTTTGAAGATGGCAATAAAAGATCTATTTTGACCACAGGTTGGAAGTTACTTAATAAAAAATATAACTTGCAAGTTGACGATGTTTGTAAGTTTGTGATGACTCAACATCGACCACTTTCATTCACTATTATTATTAGTCGAGCTAGAAAAGGACCAAGCCCTAAAAAGTTGCTAGGTTATAAAGAAGGGATCACTTGTGATAATAATATTGCAAACGGGAAAGAAATTGGAGGAAATTCTAGGAGTCTTCATAAAGTATATTTTTTTGACGATTCAAAAGGTTGTAATACAATGAAACATAACACATTCAAGATTTTGGTGAAAAATAAAAATCCGAATGTGCCAAAGGAGTTTATGAACATAGGATGTCATGACAATAATGTGGAGTTGAAAATGAGAGGACAATCGTGGTCAGTAAAAGTAAACTATTGTCCTAGTATTAAAGGCAGTAGATTCAGTGCAGGCTGGAGACAATTTGCACAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTGAGTTAATTGATAAGAAAAAATTTGTATTTAATGTTTCAATTGTAGGGAAAAACCATTGA 1314 0.3234 MSFQYRPDFRIILHDSKKLMLPKTYVEKYWEGISNPIFLKFPNGVQQEIFWVERDGEIWFQKNWENIAKFLKYGYVLTFKYIVGSYFKVKIFGVNALEINYSNIIKCVNEEVVEDVGKYKEIVEVSDESEEESDDEYEITAMKPRIRTRNDKRKFNMDLDTTQQKFSGSNNVVVKKAKKYPTILAGDERANNENPSFEVKLTPSYVNGSFLGIPTKFSREYLNKFEGTATIRVGDDEKTMEVNVRFEDGNKRSILTTGWKLLNKKYNLQVDDVCKFVMTQHRPLSFTIIISRARKGPSPKKLLGYKEGITCDNNIANGKEIGGNSRSLHKVYFFDDSKGCNTMKHNTFKILVKNKNPNVPKEFMNIGCHDNNVELKMRGQSWSVKVNYCPSIKGSRFSAGWRQFAQECNVEIGDTCLFELIDKKKFVFNVSIVGKNH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01378 437 CDD B3_DNA 195 292 IPR003340 GO:0003677
Trre2g01378 437 CDD B3_DNA 359 432 IPR003340 GO:0003677
Trre2g01378 437 SMART B3_2 197 294 IPR003340 GO:0003677
Trre2g01378 437 SMART B3_2 347 436 IPR003340 GO:0003677
Trre2g01378 437 SMART B3_2 9 95 IPR003340 GO:0003677
Trre2g01378 437 Gene3D - 4 96 IPR015300 -
Trre2g01378 437 SUPERFAMILY DNA-binding pseudobarrel domain 192 293 IPR015300 -
Trre2g01378 437 ProSiteProfiles B3 DNA-binding domain profile. 196 294 IPR003340 GO:0003677
Trre2g01378 437 Pfam B3 DNA binding domain 197 291 IPR003340 GO:0003677
Trre2g01378 437 Pfam B3 DNA binding domain 358 433 IPR003340 GO:0003677
Trre2g01378 437 SUPERFAMILY DNA-binding pseudobarrel domain 12 95 IPR015300 -
Trre2g01378 437 SUPERFAMILY DNA-binding pseudobarrel domain 357 435 IPR015300 -
Trre2g01378 437 PANTHER B3 DOMAIN-CONTAINING 354 428 - -
Trre2g01378 437 Gene3D - 334 436 IPR015300 -
Trre2g01378 437 Gene3D - 175 295 IPR015300 -
Trre2g01378 437 ProSiteProfiles B3 DNA-binding domain profile. 342 436 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01378 Trre-Chr2 11034584 11039224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01378 6 292 B3 DNA Binding Superfamily AT3G18990 24.260 9.51e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01378 B3 3.3e-10 CL0405