Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01377 ATGTCATTTCATCACCACCCTGAATTTCATAGGATAATTATGCAAGATAAGAAACTTAGGATTCCCAAGAAGTATGTGGAGAAATATTGGAAAGAGATATCAAACCCAATATTTCTAAGATTTCCAAATGGTGTTGAACAAAAAATATTTTGGAAGGTGGAGCGTAATGGTGATGTTTGCTTTGAAAAAAATTGGGAAAATTTTGCAAAGCCTCTCAAATGTGGAAGTCTCTTAACTTTTAAACACATCGGTGGACCTTATTTCAAGGTTAAGATATTTGGTGAAGAGATAAACTATTTCGATATCAAATCCGTAGAAGTTAAAGAAGAAGATGTTGAAGGTGTTGCTAAAGAAGTTATTGATTTGAGTGATGATGAGAGTGTAGAAGATGAGAGTGATTTTGAGAGTGATGATGAGTGTGAAATAGTCAAGAAACCTCAAAGGAGAACAAGCAAGAGAAAAATTCATATGGATTTGGATTCAAGTAGTAACAGAGGAGTCAATGTCAAAAAGGTAAAAAAATGTTCAACAAGTGAAGCTTTTAATGTAAGAGACATGGATGAGAATCCCTTTTTTAAACGTACAATGACAGATTCTTACGCCAGTGGCTTTTTCTTGATGCTACCAACTAAGTTCTCTAGAGAACATTTGAACAATTTTGTTGGCACTGCATTCCTACAAGTTGGTAAGGACATGCCTATGAAAGTGAACATGAAGTTTGATTTCATCAATAGAAGATTGACTATAAGTCGTGGTTGGAAGGAATTTAGGGAAAGATATAACTTGCAAGTTGATGATTCTTGTAAGTTTGTGATAATTCAATGCCGACCACTTGTATTCATTGTTGTTATTGAGCGAGCCGCAAAGGGACCAAGCCCTAAGAAGGTGCATGGTTGGAGGCAAGTTGGAGGCAATTTGTGGAAGAAAGGAAAATAG 936 0.3558 MSFHHHPEFHRIIMQDKKLRIPKKYVEKYWKEISNPIFLRFPNGVEQKIFWKVERNGDVCFEKNWENFAKPLKCGSLLTFKHIGGPYFKVKIFGEEINYFDIKSVEVKEEDVEGVAKEVIDLSDDESVEDESDFESDDECEIVKKPQRRTSKRKIHMDLDSSSNRGVNVKKVKKCSTSEAFNVRDMDENPFFKRTMTDSYASGFFLMLPTKFSREHLNNFVGTAFLQVGKDMPMKVNMKFDFINRRLTISRGWKEFRERYNLQVDDSCKFVIIQCRPLVFIVVIERAAKGPSPKKVHGWRQVGGNLWKKGK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01377 311 SUPERFAMILY DNA-binding pseudobarrel domain 187 286 IPR015300 -
Trre2g01377 311 SMART B3_2 191 287 IPR003340 GO:0003677
Trre2g01377 311 SMART B3_2 9 96 IPR003340 GO:0003677
Trre2g01377 311 Pfam B3 DNA binding domain 191 274 IPR003340 GO:0003677
Trre2g01377 311 Gene3D - 168 289 IPR015300 -
Trre2g01377 311 ProSiteProfiles B3 DNA-binding domain profile. 191 288 IPR003340 GO:0003677
Trre2g01377 311 PANTHER B3 DOMAIN-CONTAINING 4 276 - -
Trre2g01377 311 CDD B3_DNA 17 93 IPR003340 GO:0003677
Trre2g01377 311 Gene3D - 1 97 IPR015300 -
Trre2g01377 311 CDD B3_DNA 190 286 IPR003340 GO:0003677
Trre2g01377 311 SUPERFAMILY DNA-binding pseudobarrel domain 6 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01377 Trre-Chr2 11023901 11025553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01377 7 286 B3 DNA Binding Superfamily AT3G18990 26.686 1.18e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01377 B3 1.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01377 - - mtr:112418291 297.745