Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01376 ATGTCATTTCATCACCAACCTGAATTTCATAGAATAATTATGCAAGATAAGAAGCTTAGGATTCCCAAGAAGTATGTGGAGAAATATTGGAAAGGGATATCAAACCCAATATTTCTAAGATTTCCAAATGGTGTTGAGCAAAAAATATTTTGGAAGGAGAGTAATGGTGATGTTTGCTTTCAAAAAAATTGGGATAATTTTGCAAAGCCTCTCAAATATGGAAGTCTCTTAACTTTTAAACACATTGGTGGACCTTATTTCAAGGTGAAGATATTTGGTTTTAATGCTGTAGAGATAAACTATTTGAATATCAAATCTGTAGAAGATAATGAAGAAGATGTTGAAGGTGCTGCTGCTAAAGAAGTTATTGATTTGAGTGAAGATGATTGTGAAGATGAGTTTGAAGGTGAAGATGAGTATGATGATGAGTTTGAAGAGCAACCTCAGAGGAGAACAAGCAAGAGAAAAGTTCATGTGGATTTGGAATCAATTAGTAACAGAGGAGGCATGGCCAAAAAGGTAAAAAAATGTTCAACAAGTGAAGCTTTTAATGCAAGAGACATTGATGAGAATCCATTTTTTGAAGTTAAAATGACAAATTATTATGCCAATGGCCATTTCATGATGGTACCAAGTGAGTTCTCTAGAGAACACTTGAGCAATTTTGTAGGCACTGCATTCCTACAAGTTGGTAAGAACAGGCCTATGAAAGTAAACATGAAGTTTGATTTCAGCAATAGAAGATCGATTATATGTCGTGGTTGGAAGGCCTTTAGGGAAAGATATAACTTGCAAGTTGATGATGATTGTAAGTTTGTGATAATTCAACGCCGACCACTTGTATTCACTGTTGTTATTGAGCGAGCCGCAAAGGGACCAAGCCCTAAGAAGTTGCATGGTTGGAGGCAAGTTGGAGGCAATTTGTGGAAGAAAGAAAAATAG 942 0.3577 MSFHHQPEFHRIIMQDKKLRIPKKYVEKYWKGISNPIFLRFPNGVEQKIFWKESNGDVCFQKNWDNFAKPLKYGSLLTFKHIGGPYFKVKIFGFNAVEINYLNIKSVEDNEEDVEGAAAKEVIDLSEDDCEDEFEGEDEYDDEFEEQPQRRTSKRKVHVDLESISNRGGMAKKVKKCSTSEAFNARDIDENPFFEVKMTNYYANGHFMMVPSEFSREHLSNFVGTAFLQVGKNRPMKVNMKFDFSNRRSIICRGWKAFRERYNLQVDDDCKFVIIQRRPLVFTVVIERAAKGPSPKKLHGWRQVGGNLWKKEK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01376 313 Gene3D - 1 96 IPR015300 -
Trre2g01376 313 SUPERFAMILY DNA-binding pseudobarrel domain 189 286 IPR015300 -
Trre2g01376 313 SUPERFAMILY DNA-binding pseudobarrel domain 7 95 IPR015300 -
Trre2g01376 313 Gene3D - 169 291 IPR015300 -
Trre2g01376 313 ProSiteProfiles B3 DNA-binding domain profile. 193 290 IPR003340 GO:0003677
Trre2g01376 313 MobiDBLite consensus disorder prediction 136 157 - -
Trre2g01376 313 CDD B3_DNA 17 92 IPR003340 GO:0003677
Trre2g01376 313 CDD B3_DNA 192 288 IPR003340 GO:0003677
Trre2g01376 313 PANTHER B3 DOMAIN-CONTAINING 4 278 - -
Trre2g01376 313 SMART B3_2 9 95 IPR003340 GO:0003677
Trre2g01376 313 SMART B3_2 193 288 IPR003340 GO:0003677
Trre2g01376 313 Pfam B3 DNA binding domain 193 287 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01376 Trre-Chr2 11002877 11004407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01376 6 289 B3 DNA Binding Superfamily AT3G18990 26.239 1.44e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01376 B3 3.8e-08 CL0405