Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01375 ATGTCATTTACAAAACGCCCCGAATTTAGGATAGTAATATTGCAAGATCAGAAAACAGTTAGGATTCCAAAGCAATATGGGGATACATATTGGAAAGGAACACCAAACCCAATAATCCTTAGACTCCCAAATGATTTTGAAGAAGAAATATTTTGGGAGGAGAGTAATGGTGAAATTTTGTTTCAAAAAAATTGGAAAAAAATTGCAAAGCATCTTAATCATGGATATCTCTTAACTTTTAAATACATAGGTGGATCACATTTTAAGGTCAAGATATTTGGTCCCAAAGGTTTAGAACTACTTAACTATCCAAGTATAGAATCTGTAAATGAAGATTTTGTTGAAGCTACAAAAAAGGGTAAAGATATTATTGAAGTGACTGATGAGAGTGAAGATGATGAAATACCAATGCAAGCTCAAAGGACAAGAAATGGCAAGAGAAAGGGTAGGAACATAGGAAGTAGGGTGAAGAAGGCTAAAAAGTACCCAACAAATGAAGCTGTTAATGATGAAAATCCCTATTTTGAAGTTGTAATGACAAAATCTTATGTCCATGGCAATTTCATGTGGATACCAAAGAAGTTTTCAAGCAAACACTTGAACAATTTTAGTGGCATTTCAACCCTACGGGTTGATAAGGACTTCACTATGAAAGTGAATATAAGTTTTAATGATAAAAATAAAAAATCTATGATTGGTGGTGGTTGGAAGCGCTTTAGCAAAAAATCTAATTTGCAAGTTGATGATGATTGCAAGTTCGTGATGACTCGAGACCGACCACCTTCATTCGATGTTTTTATCAATCGAGCTAAAAAAGGATCAAACCCTACGAATTTGCGAGGGATCTCTTGTGATGATAATATTGCAAAGAGGAGAGACATTGGAGAAACATCTAGGAGCCGTCCAAGAGTGCATTTTGTTGAGGATTCAGAGGGTGGTAATATGATGAAACATTTCACATTCGAGATTTTGGTGAAAAATTATGAATACCCTAATTTACCAAAGGAGTTTTTAAATATAGGATGTGATGACATTTATGTGGAGTTGAAAATGGGGAGAAAATCGTGGTTTGTAAAGGTGAAGTATTTTCATTCAATTAAAGTCATTAGATTTGGTGAAGGTTGGAGACCATTTATTCAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTGAGTTAATTGATGAGAAAAAATTTGTGTTTAATGTTTTAGTTGAAAGAAACAACCATTGA 1236 0.3398 MSFTKRPEFRIVILQDQKTVRIPKQYGDTYWKGTPNPIILRLPNDFEEEIFWEESNGEILFQKNWKKIAKHLNHGYLLTFKYIGGSHFKVKIFGPKGLELLNYPSIESVNEDFVEATKKGKDIIEVTDESEDDEIPMQAQRTRNGKRKGRNIGSRVKKAKKYPTNEAVNDENPYFEVVMTKSYVHGNFMWIPKKFSSKHLNNFSGISTLRVDKDFTMKVNISFNDKNKKSMIGGGWKRFSKKSNLQVDDDCKFVMTRDRPPSFDVFINRAKKGSNPTNLRGISCDDNIAKRRDIGETSRSRPRVHFVEDSEGGNMMKHFTFEILVKNYEYPNLPKEFLNIGCDDIYVELKMGRKSWFVKVKYFHSIKVIRFGEGWRPFIQECNVEIGDTCLFELIDEKKFVFNVLVERNNH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01375 411 SUPERFAMILY DNA-binding pseudobarrel domain 6 96 IPR015300 -
Trre2g01375 411 CDD B3_DNA 173 269 IPR003340 GO:0003677
Trre2g01375 411 Gene3D - 310 410 IPR015300 -
Trre2g01375 411 Gene3D - 154 272 IPR015300 -
Trre2g01375 411 PANTHER B3 DOMAIN-CONTAINING 3 263 - -
Trre2g01375 411 Gene3D - 1 97 IPR015300 -
Trre2g01375 411 CDD B3_DNA 333 408 IPR003340 GO:0003677
Trre2g01375 411 ProSiteProfiles B3 DNA-binding domain profile. 174 271 IPR003340 GO:0003677
Trre2g01375 411 Pfam B3 DNA binding domain 345 408 IPR003340 GO:0003677
Trre2g01375 411 Pfam B3 DNA binding domain 175 264 IPR003340 GO:0003677
Trre2g01375 411 ProSiteProfiles B3 DNA-binding domain profile. 316 410 IPR003340 GO:0003677
Trre2g01375 411 SMART B3_2 9 96 IPR003340 GO:0003677
Trre2g01375 411 SMART B3_2 175 271 IPR003340 GO:0003677
Trre2g01375 411 SMART B3_2 321 410 IPR003340 GO:0003677
Trre2g01375 411 SUPERFAMILY DNA-binding pseudobarrel domain 332 406 IPR015300 -
Trre2g01375 411 SUPERFAMILY DNA-binding pseudobarrel domain 168 270 IPR015300 -
Trre2g01375 411 MobiDBLite consensus disorder prediction 140 162 - -
Trre2g01375 411 MobiDBLite consensus disorder prediction 143 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01375 Trre-Chr2 10985438 10987925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01375 72 257 B3 DNA Binding Superfamily AT3G17010 25.907 1.70e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01375 B3 1e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01375 - - tpra:123913564 536.184