Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01372 ATGTCATTGTATATCCCTCGAAAGTTCTTCAGGATTATGCAAAATGAAGATCTTCAAAACGGAGAAATTAGGGTTCCAAAAGCATTTGTGGAGTTACACTGGAAAAATGTATCAAATCCTGTAGTGTTTATTCTCCCAAATGGTGCTACACAAAAAATATATTGGGTGAAGCATAATGATAATATTTGGTTTCAAAAGAATTGGGAAAAATTTGCAAAGTTTCTAAAATTTAGATTTAATGTGTATTTTGAATACATAGGAGGTTCATATTTTAAGATTGAGATATGTGGTGTCAATACATTAGAAATTGATTATTCCAATATCAAATTCATAGATGAAGATGCGAATGATGAGATTAATGGTGTTGAAACTAGAAAAGAAGTTGAAGAAGCTGTTGAAGTGAGTGATAATAGTGATAAGAGTTTAGATGAACATGAAATACCTACACAAACTCGTAGGACCAAAAATGGCAAGAGAAAAATGAATATGGATTCTAATGGTAATCATCAAAATATATCAGGTAATAGAGGACACATGAATAAGAAGGCTAAAAAATGCTCAACAAGTAAAGGCAATATTAATGGAAGAGGTAGAAAGAGAACAACAAATTATCGTTCTTGCGGTGAGAATCCTAGTTTTGAACTTCAATTGTCACCTTTTTACGCCAATGGTCTTTGTTTGAGGATACCAAATGATTTTTCGAGAGAATACTTGAAGGGGTTCAAAGGGACTGTGAAGATTAGATTTGGTGAGGACAAGGCTATGAAAGTCAAGTTGATTATTGATGCCAATGGATCATCAATTATTACCGGGGGTTGGAAGCCATTTGCTGAAAAATATAACTTGAAATTTAAAGTTGATTATTTATGTAAATTTGAGATGACTCAAAGCAATCCATTTTCATTCACTATTACTATTAATCCAGCCATAACCAAACCAAATTCAAAAGGCCGTAATGTGATAAAGCATGACACATTCGAGCTTAATGTCAATTCCACCACATACCCGTATGTATCAAATACGTTTTTGCATAGACACAAAGAATGTTGGGGAAAATTTGTGAAGTTGAAAGTGAATGGAAAGTCATGGTCCGTAAAAGTGAACTATTATCCTCGAGGTAGTAGATTATCTGATGGTTGGACAAAGTTTAAGGAAGAATGCAATTTGGAGATCGGAGACCGTTGTCGCTTTAAGTTGATTGATGAGGAAAAATTTGTGTTTGAAGTTTCATTTGAAAGAAAGAAGTGA 1248 0.3333 MSLYIPRKFFRIMQNEDLQNGEIRVPKAFVELHWKNVSNPVVFILPNGATQKIYWVKHNDNIWFQKNWEKFAKFLKFRFNVYFEYIGGSYFKIEICGVNTLEIDYSNIKFIDEDANDEINGVETRKEVEEAVEVSDNSDKSLDEHEIPTQTRRTKNGKRKMNMDSNGNHQNISGNRGHMNKKAKKCSTSKGNINGRGRKRTTNYRSCGENPSFELQLSPFYANGLCLRIPNDFSREYLKGFKGTVKIRFGEDKAMKVKLIIDANGSSIITGGWKPFAEKYNLKFKVDYLCKFEMTQSNPFSFTITINPAITKPNSKGRNVIKHDTFELNVNSTTYPYVSNTFLHRHKECWGKFVKLKVNGKSWSVKVNYYPRGSRLSDGWTKFKEECNLEIGDRCRFKLIDEEKFVFEVSFERKK 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01372 415 MobiDBLite consensus disorder prediction 186 205 - -
Trre2g01372 415 SMART B3_2 326 415 IPR003340 GO:0003677
Trre2g01372 415 SMART B3_2 9 99 IPR003340 GO:0003677
Trre2g01372 415 SMART B3_2 213 310 IPR003340 GO:0003677
Trre2g01372 415 SUPERFAMILY DNA-binding pseudobarrel domain 209 303 IPR015300 -
Trre2g01372 415 CDD B3_DNA 211 306 IPR003340 GO:0003677
Trre2g01372 415 PANTHER B3 DOMAIN-CONTAINING 7 190 - -
Trre2g01372 415 SUPERFAMILY DNA-binding pseudobarrel domain 7 97 IPR015300 -
Trre2g01372 415 MobiDBLite consensus disorder prediction 131 205 - -
Trre2g01372 415 Pfam B3 DNA binding domain 338 413 IPR003340 GO:0003677
Trre2g01372 415 CDD B3_DNA 329 413 IPR003340 GO:0003677
Trre2g01372 415 ProSiteProfiles B3 DNA-binding domain profile. 359 415 IPR003340 GO:0003677
Trre2g01372 415 Gene3D - 6 100 IPR015300 -
Trre2g01372 415 MobiDBLite consensus disorder prediction 163 177 - -
Trre2g01372 415 MobiDBLite consensus disorder prediction 131 162 - -
Trre2g01372 415 Gene3D - 195 310 IPR015300 -
Trre2g01372 415 Gene3D - 317 415 IPR015300 -
Trre2g01372 415 SUPERFAMILY DNA-binding pseudobarrel domain 334 407 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01372 Trre-Chr2 10956579 10962291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01372 337 410 B3 DNA Binding Superfamily AT3G18990 31.081 2.68e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01372 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01372 - - cam:101508042 375.17