Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01370 ATGTCTTCTGAAGAACTTGATCATGGGAGCAATAGTGTCCACTTTTTCAAGATTATTCTTCAAACTACCCTTCAACAAGGAAAATTGAGAGTGCCTATAAGTTTTGTGAGGAGGCATTGGAAAGGAATATCAAACCCTGTTACTCTAAGGCTTCCAAATTCGACCAAAAAGAAAGTTTCTTGGGAGAAAACTAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGGGTGATTCACAATATTTGGTGTTTCGGTATCAAGGAAATTCGCTCTTTAATGTTATTGGATTTGGAAAATGCGGATTAGAAATAAAATACCCTTTAAGAGAAACTATTGATGAATATGAAGAAGCTGAAGAAAGCGATAGTTCTTTGAAAATTATTGAGGATCCTTCATCATCGCGGGGTAAAAGGACAAAATCTCCATCTTCCAAAGTATGTAAGAAGATGAAAATCAATCCAAAAGAATCTAATCATGAGAAGAGAATCGTCCAAACACATGGAAGTAGCATTGACAATCTTAAGAAGAGAAGCAATGATTTGTATGAAAAAGTGATTACAAATTTTGACTCCGATAAAAACTTCTTCGCATGTATTCTCCAAAGGTCGTACATTGAGAGAGATGTCTTGGCCATACCAATTGAATTTGCTAAGACACATCTACAAAGGATGGAAGGAAGAAATGTGACCCTTTTTGTTGACAAAGATAGAACATGGAATGTTGATTTGAAGCTCATTTCAAATAAACAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGTGCTCACTATAATTTGAAATTTGGTGATGTTTGTGTTTTTATACTAAACAAATGCAAAGGAACGGTTTCATTTCAAGTTGTTATTTTTTCTCTAGAAAAGGACATGAAAACTCCATATTTTCAAGGGTATTGTGAAGGAATGTGA 951 0.3407 MSSEELDHGSNSVHFFKIILQTTLQQGKLRVPISFVRRHWKGISNPVTLRLPNSTKKKVSWEKTSDYDVWFCNGWKEFANYLSLGDSQYLVFRYQGNSLFNVIGFGKCGLEIKYPLRETIDEYEEAEESDSSLKIIEDPSSSRGKRTKSPSSKVCKKMKINPKESNHEKRIVQTHGSSIDNLKKRSNDLYEKVITNFDSDKNFFACILQRSYIERDVLAIPIEFAKTHLQRMEGRNVTLFVDKDRTWNVDLKLISNKQFTLSGGWSKFRAHYNLKFGDVCVFILNKCKGTVSFQVVIFSLEKDMKTPYFQGYCEGM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01370 316 Gene3D - 8 108 IPR015300 -
Trre2g01370 316 Pfam B3 DNA binding domain 203 293 IPR003340 GO:0003677
Trre2g01370 316 Gene3D - 182 302 IPR015300 -
Trre2g01370 316 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Trre2g01370 316 CDD B3_DNA 14 105 IPR003340 GO:0003677
Trre2g01370 316 ProSiteProfiles B3 DNA-binding domain profile. 203 301 IPR003340 GO:0003677
Trre2g01370 316 MobiDBLite consensus disorder prediction 131 154 - -
Trre2g01370 316 CDD B3_DNA 203 299 IPR003340 GO:0003677
Trre2g01370 316 PANTHER B3 DOMAIN-CONTAINING 199 302 - -
Trre2g01370 316 SUPERFAMILY DNA-binding pseudobarrel domain 10 106 IPR015300 -
Trre2g01370 316 SMART B3_2 203 301 IPR003340 GO:0003677
Trre2g01370 316 SMART B3_2 15 108 IPR003340 GO:0003677
Trre2g01370 316 SUPERFAMILY DNA-binding pseudobarrel domain 197 299 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01370 Trre-Chr2 10936855 10938570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01370 15 315 B3 DNA Binding Superfamily AT3G18990 25.634 1.33e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01370 B3 1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01370 - - tpra:123894507 455.677