Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01366 ATGTTACTCTACTGTGGCCCTCCAAAATTCTTCAAAGTTATCCAAAACCATGAACTTCAAAATGGAGAACTTAGGGTACCAAAGAAGTTTGTTGAAAAATATTGGGATGGAATACCAAATCCAGTAGTGATTACACTACCAAATGGTGTACAACAAAAATTATTTTGGGTTAAGCGCGACGGCGATGTATGGTTTCATAAGAACTGGGAGAAAATTGCAAAGTTTCTGAAATTTGGATTTGTTGTGTATTTCAAATACATGGGAGGATCATGTTTTGAGCTAGAGATATTTGGACTCAATTGTTTGGAAATTGATTATTCTAAGTTCATACATCCAAAAAGTGAAGCTGAATTTGTTGAAGTGGCAGAGCCAAAAATCTCAAGGAGGAAATTTGTTGATGAAAATAATATTGCTGGTACATCTCAAAGAAGAAAAAGGGGTAATAAGAGAGGTGCGACTAATCCATGTTTTGACCTTAAACTGACCCACACTTATGCAACAGGCTATTTATTTAGGATTCCGTGTGACTTTTCAAGAACATACTTGAAAGATTTTGAAGGGTCTGCAAGAATAAGAAAACTTGGCGATGATAGGAGTTGGAAGATCGAGGTGAAATATGAACGGAAAGGTGATAATTATGTTGTAAACAAAGGTTGGAATCCATTTACGAAGGAATATAACTTGAAAGCTGATGATGTGTGTAAGTTTGAGATGACTCATTCCAAACCACCTTGTTTTACTATTACAATTACACGAGTTTGA 762 0.3543 MLLYCGPPKFFKVIQNHELQNGELRVPKKFVEKYWDGIPNPVVITLPNGVQQKLFWVKRDGDVWFHKNWEKIAKFLKFGFVVYFKYMGGSCFELEIFGLNCLEIDYSKFIHPKSEAEFVEVAEPKISRRKFVDENNIAGTSQRRKRGNKRGATNPCFDLKLTHTYATGYLFRIPCDFSRTYLKDFEGSARIRKLGDDRSWKIEVKYERKGDNYVVNKGWNPFTKEYNLKADDVCKFEMTHSKPPCFTITITRV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01366 253 CDD B3_DNA 155 252 IPR003340 GO:0003677
Trre2g01366 253 SMART B3_2 157 252 IPR003340 GO:0003677
Trre2g01366 253 SMART B3_2 10 100 IPR003340 GO:0003677
Trre2g01366 253 SUPERFAMILY DNA-binding pseudobarrel domain 153 249 IPR015300 -
Trre2g01366 253 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Trre2g01366 253 ProSiteProfiles B3 DNA-binding domain profile. 156 253 IPR003340 GO:0003677
Trre2g01366 253 PANTHER B3 DOMAIN-CONTAINING 7 242 - -
Trre2g01366 253 Pfam B3 DNA binding domain 170 242 IPR003340 GO:0003677
Trre2g01366 253 CDD B3_DNA 8 97 IPR003340 GO:0003677
Trre2g01366 253 Gene3D - 138 253 IPR015300 -
Trre2g01366 253 Gene3D - 5 101 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01366 Trre-Chr2 10916738 10918308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01366 112 253 B3 DNA Binding Superfamily AT3G18990 26.531 3.03e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01366 B3 3.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01366 - - tpra:123898681 331.643