Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01365 ATGTCCATTCACCATGGTCGTGGCAGTGAAGCTAAGGGAATTCACTTCTTCCAAACTATTCAACTTCCTCAGTTGCAAAGCAAAGATCTAATGATTCCAAGAAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAAACTTCCAAATGAGTCAATTTGCAAAATATTTTGGGTGCAATTGGGTGATGATGTTTGGCTTCTAGATTGGAAAAGGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTGGTTTTTCGATACAAAGGAGGATCGGATTTTCATGTCATTATATTCGATGATAGTAAATTAGAAATCGACTATTCGAGTATGATTTTTAATGATGAACAAGAAGCTAATGAGAGTGAAGATGATGTTATTGAGATTACAGATGAGAGTGATGATTATCAAGTTAAAAGTGAAGCTGAATCTGTTGAAGTGACAGAGCCAAAAAACTCAAAGAGTAAATTTGTTGATGAAACTAATATTGCTAGTACATCTCAAAGAAGAAAAAGGGGTAATAAGAGTGGTGTGACTAGTCCATGTTTTGAGCTTAAACTGACCCACACTTATGCAACAGGCTATTTATTTAGGATTCCGTGTGATTTTTCAAGAACATACTTGAAAGATTTTGAAGGGTCTGTAAAAATAAGAAGACTTGGTGAGGATAGGAGTTGGAAGATCGAGGTGAAATATGATCGGAAAAATGATTCTTCTATTGTAAACGGTGGTTGGAAATCATTTAGAGAAAAATATAACTTGAAGGCTGAAGATATTTGTAGGTTTGAGATGACTCATTCCGAACCTCCTTGTTTTACTATTACTATTACACGAGCGGAAGAAAGTCTTAACAAGTAG 867 0.3529 MSIHHGRGSEAKGIHFFQTIQLPQLQSKDLMIPRNFVERYWKDVSNPISLKLPNESICKIFWVQLGDDVWLLDWKRFARSLRCGDLLVFRYKGGSDFHVIIFDDSKLEIDYSSMIFNDEQEANESEDDVIEITDESDDYQVKSEAESVEVTEPKNSKSKFVDETNIASTSQRRKRGNKSGVTSPCFELKLTHTYATGYLFRIPCDFSRTYLKDFEGSVKIRRLGEDRSWKIEVKYDRKNDSSIVNGGWKSFREKYNLKAEDICRFEMTHSEPPCFTITITRAEESLNK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01365 288 Gene3D - 8 106 IPR015300 -
Trre2g01365 288 CDD B3_DNA 15 103 IPR003340 GO:0003677
Trre2g01365 288 SUPERFAMILY DNA-binding pseudobarrel domain 14 104 IPR015300 -
Trre2g01365 288 Gene3D - 164 285 IPR015300 -
Trre2g01365 288 SMART B3_2 16 105 IPR003340 GO:0003677
Trre2g01365 288 SMART B3_2 186 283 IPR003340 GO:0003677
Trre2g01365 288 Pfam B3 DNA binding domain 197 277 IPR003340 GO:0003677
Trre2g01365 288 SUPERFAMILY DNA-binding pseudobarrel domain 181 282 IPR015300 -
Trre2g01365 288 CDD B3_DNA 184 281 IPR003340 GO:0003677
Trre2g01365 288 ProSiteProfiles B3 DNA-binding domain profile. 185 283 IPR003340 GO:0003677
Trre2g01365 288 PANTHER B3 DOMAIN-CONTAINING 8 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01365 Trre-Chr2 10912355 10914100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01365 16 286 B3 DNA Binding Superfamily AT3G18990 23.529 2.08e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01365 B3 2.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01365 - - mtr:112418246 280.796