Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01364 ATGTTGTTGCAGATGATTCCAAGGAATTTTGTTGAGAGATATTGGAAACATGTATCAAATCCAATATCCCTTAAACTTCCAAATGAGTCAATTTGTAAAATATTTTGGGTGCAATTGTGTGATGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAAACTTCCAAATGAGTCAATTTGTAAAATATTTTGGGTGCAATTGTGTGATGATGTTTGGCTTCTAGATTGGAAAAGGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTGGTTTTTCAATACAAAGGAGGATCAAATTTTCATGTCATTATATTCGACGATAGTAAATTAGAAATCGACTATTCAAGTATGATTTTTAATGATGAACAAGAAGCTAATGAGAGTAATGATGATGAACAAGAAGCTAAAGAGAGTGATGATGATGTTATTGAGATTACAGATGAGAGTGATGATGATCAAGTCTCGGATGTTAGTGATGATGAACAAATTTCGGATGATAGTGATGATGAACAAGTCTCAGGCAAAGGTGTGACGAACAATCCAAGTTTTGAATCTACACTGTCAGAAACTTCTGCACAAGGCTATACATTTTTCATTCCAAGTGAGTTTTCAAGAAGATACATGAAAGATTTTCAAGGGATTGCAAGGATAAGGGTTGGTGAGGATAGGATTTGGAAGGTGGGAGTGAAACATAAATTTTGTCGTGGTTCTACATATTCTGTTGTGAATCGTGGTTGGAAACGATTTTCCACGAAATATAACTTGCAAACCGGTGATGTTTGTAAGTTTGAGATGACTCAATCCGTACCACTTTCTTTTACTATTACTATTACTCGAGCCTGA 846 0.3522 MLLQMIPRNFVERYWKHVSNPISLKLPNESICKIFWVQLCDERYWKDVSNPISLKLPNESICKIFWVQLCDDVWLLDWKRFARSLRCGDLLVFQYKGGSNFHVIIFDDSKLEIDYSSMIFNDEQEANESNDDEQEAKESDDDVIEITDESDDDQVSDVSDDEQISDDSDDEQVSGKGVTNNPSFESTLSETSAQGYTFFIPSEFSRRYMKDFQGIARIRVGEDRIWKVGVKHKFCRGSTYSVVNRGWKRFSTKYNLQTGDVCKFEMTQSVPLSFTITITRA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01364 281 SMART B3_2 184 280 IPR003340 GO:0003677
Trre2g01364 281 Gene3D - 168 281 IPR015300 -
Trre2g01364 281 ProSiteProfiles B3 DNA-binding domain profile. 183 281 IPR003340 GO:0003677
Trre2g01364 281 SUPERFAMILY DNA-binding pseudobarrel domain 180 277 IPR015300 -
Trre2g01364 281 SUPERFAMILY DNA-binding pseudobarrel domain 76 116 IPR015300 -
Trre2g01364 281 CDD B3_DNA 182 280 IPR003340 GO:0003677
Trre2g01364 281 Gene3D - 3 110 IPR015300 -
Trre2g01364 281 MobiDBLite consensus disorder prediction 147 187 - -
Trre2g01364 281 Pfam B3 DNA binding domain 197 279 IPR003340 GO:0003677
Trre2g01364 281 PANTHER B3 DOMAIN-CONTAINING 46 267 - -
Trre2g01364 281 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01364 Trre-Chr2 10909018 10910106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01364 181 280 REM Transcription Factor Family AT1G49480 27.723 6.19e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01364 B3 4.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01364 - - mtr:112418246 259.225