Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01363 ATGTCATTGTATTGTGGTCCTCCAAAATTCTTCAAGGTTATCCAAAATCATGAACTCCAAAATGGAGGGCTTAGGGTACCAAAGAAATTTGTTGAGAAATATTGGAATGGAATACCAAATCCAGTAGTTGTCACACTTCCTAATGGTATTCAGCAAAAAATATTTTGGATTAAGCGCGACGGCGATGTATGGTTTCAAAAGAACTGGAAGAAAATAGTGAAATTTTTGAAATTTGGTTATCTTGTTGTTTTCAAATATGTTGGTGGTTCTTGTTTCCAGCTTGATATATTTGACCGCAATTGTGTGGAAATTGACTATTCCAAGTGCATAGATCAAGTTAAAAAAGAATCTGAATTTGTTCATGTGGTAGATGATGATGAAACTAATATTAATGCTGGCACATCTCAAACAACAAAAAGAGGTACTAAGAGAGGTACTGTGAGTACTAATCCAAGTTTTGACCTTACATTGACCCAAACTTATGCACTAGGATATTTATTTAGGATTCCAACTGAATTTTCAAGAAGGTACTTGAAAGATTTTGAAGGGATGGCAAGGTTAAGAAAGATTGGTGATGATAGGACTTGGAAGGTGGAGGTGAAACATGAGATTATAGGTGGTAATGATTATTCTGTTGTGAAAAGTGGTTGGAAACCATTTGACGAGGAATATAACTTGCAAATTTATGATGTTTGTAACTTTGAGATGACTCGATCCGAACCTCTTTGTTTTACCGTCACTATTACCCGAGCTTGA 756 0.3532 MSLYCGPPKFFKVIQNHELQNGGLRVPKKFVEKYWNGIPNPVVVTLPNGIQQKIFWIKRDGDVWFQKNWKKIVKFLKFGYLVVFKYVGGSCFQLDIFDRNCVEIDYSKCIDQVKKESEFVHVVDDDETNINAGTSQTTKRGTKRGTVSTNPSFDLTLTQTYALGYLFRIPTEFSRRYLKDFEGMARLRKIGDDRTWKVEVKHEIIGGNDYSVVKSGWKPFDEEYNLQIYDVCNFEMTRSEPLCFTVTITRA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01363 251 SMART B3_2 10 100 IPR003340 GO:0003677
Trre2g01363 251 SMART B3_2 153 250 IPR003340 GO:0003677
Trre2g01363 251 SUPERFAMILY DNA-binding pseudobarrel domain 6 101 IPR015300 -
Trre2g01363 251 Gene3D - 134 251 IPR015300 -
Trre2g01363 251 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Trre2g01363 251 Pfam B3 DNA binding domain 166 249 IPR003340 GO:0003677
Trre2g01363 251 CDD B3_DNA 8 98 IPR003340 GO:0003677
Trre2g01363 251 ProSiteProfiles B3 DNA-binding domain profile. 152 251 IPR003340 GO:0003677
Trre2g01363 251 SUPERFAMILY DNA-binding pseudobarrel domain 148 250 IPR015300 -
Trre2g01363 251 Gene3D - 6 102 IPR015300 -
Trre2g01363 251 PANTHER B3 DOMAIN-CONTAINING 7 123 - -
Trre2g01363 251 CDD B3_DNA 151 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01363 Trre-Chr2 10905777 10906999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01363 8 164 B3 DNA Binding Superfamily AT3G18990 29.697 3.62e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01363 B3 1.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01363 - - tpra:123898681 310.071