Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01361 ATGATTCCAAGGAATTTTGTAGAGAGTTATTGGAAAGATGTATCAAATCCAATATCTCTTAAACTTCCAAACGGGTCTGATTGCAAAATGTATTGGGTGCAACAAGAGGCTAATAGAAACAGAGAAGGCAGGGATGAGAAAGCTAAGAAATGTACAAAAACTAAAGATGCAAATGAGAGAAGAAGCACTAACACTCATCCCCACGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTAATGTGGAAGGTGATGTATTATTGAACATACCTATTCAATTTTCGAAAGAATACAAGAATGAGTTGTTGCAAGGGAATGCAGCGATTAGAAGTGCTGGTGAGGAAAGGACATGGCACGTGACATTAACACGGGATAATTACGAAGGAAAATTTAGAATAACAGGTGGTTGGAAGTCATTTTCACAGGAACATAACTTGCATGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACCATTACTATTACTCCATCTACAAAAGAACCATGCCCGGAGCAGTTTCAAGATTCTGAAACTCCAATTTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAATTTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTTTAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTCGCGAGAGAATGCAAAGTAAAGATTGGAGACACTCTTTTGTTTGAGACGATGGATTTGCAAAATCATGTGTTCAAGGTTTCGATTACCCTAGATGTTTAG 852 0.3744 MIPRNFVESYWKDVSNPISLKLPNGSDCKMYWVQQEANRNREGRDEKAKKCTKTKDANERRSTNTHPHENPNFTLKLSRSNVEGDVLLNIPIQFSKEYKNELLQGNAAIRSAGEERTWHVTLTRDNYEGKFRITGGWKSFSQEHNLHVGDVCKFEMTQREPLSFTITITPSTKEPCPEQFQDSETPILHNKFKVSVTSLFMLVIPSEFLKRHNISSGISVELKVGEGTWFVEVSFKQHLDYGWFTKGWPEFARECKVKIGDTLLFETMDLQNHVFKVSITLDV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01361 283 ProSiteProfiles B3 DNA-binding domain profile. 73 172 IPR003340 GO:0003677
Trre2g01361 283 Gene3D - 48 173 IPR015300 -
Trre2g01361 283 Gene3D - 177 282 IPR015300 -
Trre2g01361 283 Pfam B3 DNA binding domain 73 168 IPR003340 GO:0003677
Trre2g01361 283 Pfam B3 DNA binding domain 193 269 IPR003340 GO:0003677
Trre2g01361 283 PANTHER B3 DOMAIN-CONTAINING 192 280 - -
Trre2g01361 283 SUPERFAMILY DNA-binding pseudobarrel domain 183 279 IPR015300 -
Trre2g01361 283 CDD B3_DNA 71 168 IPR003340 GO:0003677
Trre2g01361 283 MobiDBLite consensus disorder prediction 38 66 - -
Trre2g01361 283 MobiDBLite consensus disorder prediction 37 73 - -
Trre2g01361 283 CDD B3_DNA 192 279 IPR003340 GO:0003677
Trre2g01361 283 ProSiteProfiles B3 DNA-binding domain profile. 187 283 IPR003340 GO:0003677
Trre2g01361 283 SMART B3_2 73 172 IPR003340 GO:0003677
Trre2g01361 283 SMART B3_2 192 278 IPR003340 GO:0003677
Trre2g01361 283 SUPERFAMILY DNA-binding pseudobarrel domain 68 167 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01361 Trre-Chr2 10899251 10903194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01361 71 182 B3 DNA Binding Superfamily AT5G42700 30.357 3.06e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01361 B3 1.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01361 - - tpra:123923263 352.058