Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01360 ATGTGCTTGCAGATGATTCCAAGGAATTTTGTAGAGAGTTATTGGAAAGATGTATCAAATCCAATATCTCTTAAACTTCCAAACGGGTCTGATTGCAAAATGTATTGGGTGCAACAAGAGGCTAATAGAAACAGAGAAGGCAGGGATGAGAAAGCTAAGAAATGTACAAAAACTAAAGATGCAAATGAGAGAAGAAGCACTAACACTCATCCCCACGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTAATGTGGAAGGTGATGTATTATTGAACATACCTATTCAATTTTCGAAAGAATACAAGAATGAGTTGTTGCAAGGGAATGCAGCGATTAGAAGTGCTGGTGAGGAAAGGACATGGCACGTGACATTAACACGGGATAATTACGAAGGAAAATTTAGAATAACAGGTGGTTGGAAGTCATTTTCACAGGAACATAACTTGCATGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACCATTACTATTACTCCATCTACAAAAGAACCATGCCCGGAGCAGTTTCAAGATTCTGAAACTCCAATTTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAATTTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTTTAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTCGCGAGAGAATGCAAAGTAAAGATTGGAGACACTCTTTTGTTTGAGACGATGGATTTGCAAAATCATGTGTTCAAGGTTTCGATTACCCTAGATGTTTAG 864 0.3762 MCLQMIPRNFVESYWKDVSNPISLKLPNGSDCKMYWVQQEANRNREGRDEKAKKCTKTKDANERRSTNTHPHENPNFTLKLSRSNVEGDVLLNIPIQFSKEYKNELLQGNAAIRSAGEERTWHVTLTRDNYEGKFRITGGWKSFSQEHNLHVGDVCKFEMTQREPLSFTITITPSTKEPCPEQFQDSETPILHNKFKVSVTSLFMLVIPSEFLKRHNISSGISVELKVGEGTWFVEVSFKQHLDYGWFTKGWPEFARECKVKIGDTLLFETMDLQNHVFKVSITLDV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01360 287 SUPERFAMILY DNA-binding pseudobarrel domain 72 171 IPR015300 -
Trre2g01360 287 SMART B3_2 196 282 IPR003340 GO:0003677
Trre2g01360 287 SMART B3_2 77 176 IPR003340 GO:0003677
Trre2g01360 287 CDD B3_DNA 75 172 IPR003340 GO:0003677
Trre2g01360 287 SUPERFAMILY DNA-binding pseudobarrel domain 187 283 IPR015300 -
Trre2g01360 287 ProSiteProfiles B3 DNA-binding domain profile. 191 287 IPR003340 GO:0003677
Trre2g01360 287 MobiDBLite consensus disorder prediction 42 70 - -
Trre2g01360 287 CDD B3_DNA 196 283 IPR003340 GO:0003677
Trre2g01360 287 ProSiteProfiles B3 DNA-binding domain profile. 77 176 IPR003340 GO:0003677
Trre2g01360 287 Gene3D - 181 286 IPR015300 -
Trre2g01360 287 Gene3D - 50 177 IPR015300 -
Trre2g01360 287 PANTHER B3 DOMAIN-CONTAINING 196 284 - -
Trre2g01360 287 MobiDBLite consensus disorder prediction 41 79 - -
Trre2g01360 287 Pfam B3 DNA binding domain 197 273 IPR003340 GO:0003677
Trre2g01360 287 Pfam B3 DNA binding domain 77 172 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01360 Trre-Chr2 10899239 10903194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01360 75 186 B3 DNA Binding Superfamily AT5G42700 30.357 3.39e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01360 B3 1.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01360 - - tpra:123923263 352.058