Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01356 ATGAATATGAATGCAACCCAGCAAAAAATCTCAGAGGCGAATAGTTACACCGGAGGTATGGGTAAGAATGTTAAAAAATGCACTAAAACTAAAGATGGGAATGAGAGAAACGGAAAATATTCTAATCCCAATGAGAATCCCAGTTTCACTCTCACATTACCGCGATCTTATGTCGAAGGTCGTAAAATAAGGCTGAGGATACCTACTCAGTTTTCGAAAGATTACATGAATGAGTTGTTGCAAATGAACGCAACGATTAGAAGTGTTGGTGAGGACAGGACATGGTCCGTGAAGTTAAACTTTGATCAACGCAAGAGTCATTTTGAAATGACAACTGGTTGGAAGTCATTTGCACAAGAACATAACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACAATTACTATTACTCCATCTACAAAGGAACCATGCACGGAGCAGTTTCGAGAAAACCAACGAGTCCACGAAAAATCAGAGACAACTCCGGTAAAAAATATGGAATATGTGGGCAACTTTGAAGAAGGAATTTTAAGGAGCTGCTCAAAAGCACATGGTCTTAAGAATTCTGAAACTCCAAATTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGAAAATACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGTGAAAGAACATGGTTTGTAGAGGTGAGTTATAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACGCTTGTTTGTTTGAGATTATTGATTTGCAAAATCATGTTTTCAAGGTTTCAATTATCCTAGATGTTTAG 897 0.3679 MNMNATQQKISEANSYTGGMGKNVKKCTKTKDGNERNGKYSNPNENPSFTLTLPRSYVEGRKIRLRIPTQFSKDYMNELLQMNATIRSVGEDRTWSVKLNFDQRKSHFEMTTGWKSFAQEHNLQVGDVCKFEMTQREPLSFTITITPSTKEPCTEQFRENQRVHEKSETTPVKNMEYVGNFEEGILRSCSKAHGLKNSETPNLHNKFKVSVTSLFMLKIPSEFLKRHNISSGNSVELKVGERTWFVEVSYKQHLDYGWFTKGWPEFVRECKVKIGDACLFEIIDLQNHVFKVSIILDV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01356 298 SUPERFAMILY DNA-binding pseudobarrel domain 206 295 IPR015300 -
Trre2g01356 298 ProSiteProfiles B3 DNA-binding domain profile. 50 149 IPR003340 GO:0003677
Trre2g01356 298 ProSiteProfiles B3 DNA-binding domain profile. 202 298 IPR003340 GO:0003677
Trre2g01356 298 CDD B3_DNA 47 145 IPR003340 GO:0003677
Trre2g01356 298 Gene3D - 185 297 IPR015300 -
Trre2g01356 298 Gene3D - 28 149 IPR015300 -
Trre2g01356 298 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g01356 298 Pfam B3 DNA binding domain 56 145 IPR003340 GO:0003677
Trre2g01356 298 Pfam B3 DNA binding domain 208 288 IPR003340 GO:0003677
Trre2g01356 298 SUPERFAMILY DNA-binding pseudobarrel domain 44 144 IPR015300 -
Trre2g01356 298 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 152 IPR044837 -
Trre2g01356 298 SMART B3_2 49 149 IPR003340 GO:0003677
Trre2g01356 298 SMART B3_2 207 293 IPR003340 GO:0003677
Trre2g01356 298 CDD B3_DNA 207 295 IPR003340 GO:0003677
Trre2g01356 298 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01356 Trre-Chr2 10879734 10881958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01356 37 283 REM Transcription Factor Family AT4G31690 27.059 1.36e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01356 B3 4.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01356 - - tpra:123913547 477.633