Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01355 ATGAATATGAATGCAACCCAGCAAAAAATCTCAGAGGCGAATAGTTACACCGGAGGTATGGGTAAGAATGTTAAAAAATGCACTAAAACTAAAGATGGGAATGAGAGAAACGGAAAATATTCTAATCCCAATGAGAATCCCAGTTTCACTCTCACATTACCGCGATCTTATGTCGAAGGTCGTAAAATAAGGCTGAGGATACCTACTCAGTTTTCGAAAGATTACATGAATGAGTTGTTGCAAATGAACGCAACGATTAGAAGTGTTGGTGAGGACAGGACATGGTCCGTGAAGTTAAACTTTGATCAACGCAAGAGTCATTTTGAAATGACAACTGGTTGGAAGTCATTTGCACAAGAACATAACTTGCAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACAATTACTATTACTCCATCTACAAAGGAACCATGCACGGAGCAGTTTCGAGGTTGTGGACATGCAGAAAACCAACGAGTCCACGAAAAATCAGAGACAACTCCGGTAAAAAATATGGAATATGTGGGCAACTTTGAAGAAGGAATTTTAAGGAGCTGCTCAAAAGCACATGGTCTTAAGAATTCTGAAACTCCAAATTTACATAATAAATTCAAGGTTTCTGTAACATCATTATTCATGCTGAAAATACCAAGTGAGTTCTTGAAGAGACACAATATTTCTAGTGGAAATTCAGTCGAGTTGAAAGTAGGTGAAAGAACATGGTTTGTAGAGGTGAGTTATAAACAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTAAAGATTGGAGACGCTTGTTTGTTTGAGATTATTGATTTGCAAAATCATGTTTTCAAGGTTTCAATTATCCTAGATGTTTAG 912 0.3706 MNMNATQQKISEANSYTGGMGKNVKKCTKTKDGNERNGKYSNPNENPSFTLTLPRSYVEGRKIRLRIPTQFSKDYMNELLQMNATIRSVGEDRTWSVKLNFDQRKSHFEMTTGWKSFAQEHNLQVGDVCKFEMTQREPLSFTITITPSTKEPCTEQFRGCGHAENQRVHEKSETTPVKNMEYVGNFEEGILRSCSKAHGLKNSETPNLHNKFKVSVTSLFMLKIPSEFLKRHNISSGNSVELKVGERTWFVEVSYKQHLDYGWFTKGWPEFVRECKVKIGDACLFEIIDLQNHVFKVSIILDV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01355 303 ProSiteProfiles B3 DNA-binding domain profile. 207 303 IPR003340 GO:0003677
Trre2g01355 303 SUPERFAMILY DNA-binding pseudobarrel domain 211 300 IPR015300 -
Trre2g01355 303 ProSiteProfiles B3 DNA-binding domain profile. 50 149 IPR003340 GO:0003677
Trre2g01355 303 Gene3D - 28 149 IPR015300 -
Trre2g01355 303 Gene3D - 191 302 IPR015300 -
Trre2g01355 303 SUPERFAMILY DNA-binding pseudobarrel domain 44 144 IPR015300 -
Trre2g01355 303 CDD B3_DNA 212 300 IPR003340 GO:0003677
Trre2g01355 303 Pfam B3 DNA binding domain 213 293 IPR003340 GO:0003677
Trre2g01355 303 Pfam B3 DNA binding domain 56 145 IPR003340 GO:0003677
Trre2g01355 303 CDD B3_DNA 47 145 IPR003340 GO:0003677
Trre2g01355 303 SMART B3_2 49 149 IPR003340 GO:0003677
Trre2g01355 303 SMART B3_2 212 298 IPR003340 GO:0003677
Trre2g01355 303 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g01355 303 MobiDBLite consensus disorder prediction 1 51 - -
Trre2g01355 303 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 152 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01355 Trre-Chr2 10879734 10881958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01355 65 288 B3 DNA Binding Superfamily AT4G00260 27.511 6.78e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01355 B3 4.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01355 - - tpra:123913547 471.47