Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01353 ATGTTCTTGATGTTGCTGGCCCTATTATTGCAAATGGATCTCATTATTCTTGAGTTTTTCAATTTCATTCGTGGTTTGAGAACTAATTTGAGAGAAGTTCCCACCATTTTGGCTTCGGTTTTATCTATGCGTATTGTTGCCACATATCAGTTTTGCTTAGAGGTGAAGAGTAATAGAGGAGGCATGGGTAAGAAAGCTAAGAAATGCACAAAAATTAAAGATGGTAATGAGAGAAGCTGCACAAATTCTAATCACAATGAGAATCCCAGTTTCACTCTCACATTACCACGATCTTATGTGGAAGGTGATAAGTTAAAATTGAGGATACCTAATTGGTTTTCAAAAGAATACATGAATGAGTTGTTGCAAATGAATGCAACGATTAGAAGTGTTGGTGAGGACCGGACATGGTGCGTGAAGTTATTCTTTGAAGAACACAAAAGAACCTTTACAGTGACCACTGGTTGGAAGTCATTTTCACAAGAACATAACTTACAACTTGGTGATGTATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACAATTACTATTATTCCAGCTACAAAGGAACCATGCACGGAGCAGTTTCAAGAAAACCAACGAGTCCAAGAAAACTCGGGGACAACTCATGTAGAAGATATGGAATATGTGGGTAATTTTGAAGAAGGAATTTTAAGGAGCTGCCCAAAAACACATGGTGTTACGAATTCCGAAAGTCTGGATTTACACAATAAATTCAAGGTTTTTGTAACATCATTGTTCATGCTGGTCGTACCAAGTGAGTTGTTGAAGGGACACAATATTTCTAGTGGAAGTTCAGTCGAGTTGAAAGTAGGGGACGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAAAGTTAAGATTGGAGACACTTGTTTGTTTGAGATTATTGATGTGCAAAATCATGTGTTTAAGGTTTCAATTATCATGGATGTTTAG 1023 0.3715 MFLMLLALLLQMDLIILEFFNFIRGLRTNLREVPTILASVLSMRIVATYQFCLEVKSNRGGMGKKAKKCTKIKDGNERSCTNSNHNENPSFTLTLPRSYVEGDKLKLRIPNWFSKEYMNELLQMNATIRSVGEDRTWCVKLFFEEHKRTFTVTTGWKSFSQEHNLQLGDVCKFEMTQREPLSFTITIIPATKEPCTEQFQENQRVQENSGTTHVEDMEYVGNFEEGILRSCPKTHGVTNSESLDLHNKFKVFVTSLFMLVVPSELLKGHNISSGSSVELKVGDGTWFVEVSYNQHLDYGWFTKGWPEFVRECKVKIGDTCLFEIIDVQNHVFKVSIIMDV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01353 340 SUPERFAMILY DNA-binding pseudobarrel domain 86 187 IPR015300 -
Trre2g01353 340 SUPERFAMILY DNA-binding pseudobarrel domain 253 337 IPR015300 -
Trre2g01353 340 CDD B3_DNA 249 337 IPR003340 GO:0003677
Trre2g01353 340 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 81 195 IPR044837 -
Trre2g01353 340 ProSiteProfiles B3 DNA-binding domain profile. 244 340 IPR003340 GO:0003677
Trre2g01353 340 SMART B3_2 91 191 IPR003340 GO:0003677
Trre2g01353 340 SMART B3_2 248 340 IPR003340 GO:0003677
Trre2g01353 340 Pfam B3 DNA binding domain 105 189 IPR003340 GO:0003677
Trre2g01353 340 Pfam B3 DNA binding domain 253 336 IPR003340 GO:0003677
Trre2g01353 340 ProSiteProfiles B3 DNA-binding domain profile. 92 191 IPR003340 GO:0003677
Trre2g01353 340 Gene3D - 71 192 IPR015300 -
Trre2g01353 340 Gene3D - 237 339 IPR015300 -
Trre2g01353 340 CDD B3_DNA 89 189 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01353 Trre-Chr2 10874595 10877055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01353 102 325 REM Transcription Factor Family AT4G31690 28.879 1.83e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01353 B3 5.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01353 - - tpra:123913547 525.398