Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01352 ATGAGGTACAATGATGACAAAGAAGAAGAAGAGTGTGATGATGATGGCTATGCTGAGATTACAAATGAGGGTGACAATACCAAACAATCCTTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCTACTACTGCTGCTACAACTCAAGTGACAAACATTGTCAATAGAAAAATTAATATGAAGGCAACAAACCAAAAAGTCTCAGAGGCTAATGGAAACAGACGAGAAAGCGGTAAGAAAGCAAAGAAATTCTCAAAAACTGTCGATGCAAATAAGAGAAGCTGCATTGAGAATCCTGATGAGACTCCCAATTTCACTCTCAAATTATCGCGAGCTTATGTGGAAGGTGATGCAGTTTTGAGGATACCTTGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAATGCAACGATTAGAAGTGTTGGTGATGAAATGGCATGGTACGTGGCATTAAACTTTCATGAATGCAATAGAAATTTTAGAATCGGAGCTGGTTGGAAGTCATTTTTAAGAGAACATAATTTGCAAGTCGGCGATGAATGTAAATTTGAGATGACTCAACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAAGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGACATCGCCTGTAGAAGATATGGATTATGTGGGCAATTATGGAGAAGGAATTTCTAGGAGCTGCCCAAAAACACATGATTCTGAAAGTCCGAATTTACTTAATAAATTCAAGGTTTTTGTTACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGGTGGTTCACTGAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATTGGAGACACTCTTTTGTTTGAGATTATTGATTTGCAAAATCATGTGTTCAAGCTTTTTCTGCGTTTGTATGCGCTGACAGAAGACAGGAATTGTTCAGTAGCAGATGCGGGTTATTGGTCTGAAGGTGTTTGGCAATGGAACCTGTCTTGGCGATGTCCACTGCTGCGTTTGGAAGAACCTGATAGAGCAGAGTTGATGCAGCTTCTGGACGGGATAAGTGGATTTGAATGTTGGATCTGGTAA 1221 0.3874 MRYNDDKEEEECDDDGYAEITNEGDNTKQSFKKKKINSNDSATTAATTQVTNIVNRKINMKATNQKVSEANGNRRESGKKAKKFSKTVDANKRSCIENPDETPNFTLKLSRAYVEGDAVLRIPCWFSKEYMNELLQGNATIRSVGDEMAWYVALNFHECNRNFRIGAGWKSFLREHNLQVGDECKFEMTQREPLSFTITIVPATKEPCPEQFQENQRVKEKSETSPVEDMDYVGNYGEGISRSCPKTHDSESPNLLNKFKVFVTTLDKLVIPSEFLKRHNISNGNSVELKVGEGTWFVEVSYNQHLDYGWFTEGWPEFVRECKVKIGDTLLFEIIDLQNHVFKLFLRLYALTEDRNCSVADAGYWSEGVWQWNLSWRCPLLRLEEPDRAELMQLLDGISGFECWIW 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01352 406 SUPERFAMILY DNA-binding pseudobarrel domain 262 345 IPR015300 -
Trre2g01352 406 SUPERFAMILY DNA-binding pseudobarrel domain 100 200 IPR015300 -
Trre2g01352 406 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Trre2g01352 406 CDD B3_DNA 103 200 IPR003340 GO:0003677
Trre2g01352 406 ProSiteProfiles B3 DNA-binding domain profile. 105 204 IPR003340 GO:0003677
Trre2g01352 406 Pfam B3 DNA binding domain 263 344 IPR003340 GO:0003677
Trre2g01352 406 Pfam B3 DNA binding domain 105 201 IPR003340 GO:0003677
Trre2g01352 406 CDD B3_DNA 259 333 IPR003340 GO:0003677
Trre2g01352 406 Gene3D - 246 347 IPR015300 -
Trre2g01352 406 Gene3D - 74 205 IPR015300 -
Trre2g01352 406 MobiDBLite consensus disorder prediction 1 44 - -
Trre2g01352 406 MobiDBLite consensus disorder prediction 62 83 - -
Trre2g01352 406 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 209 IPR044837 -
Trre2g01352 406 SMART B3_2 258 348 IPR003340 GO:0003677
Trre2g01352 406 SMART B3_2 105 204 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01352 Trre-Chr2 10867701 10870583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01352 120 347 REM Transcription Factor Family AT4G31690 27.848 5.07e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01352 B3 4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01352 - - tpra:123923263 543.888