Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01350 ATGTCATTGTATTGTAGTCCTCCAAAGTTCTTCAAGATTATCCAAAATCATGAACTTCAAAATGGAGAGCTTAGGGTACCAAAGAAGTTTGTGGAAAAATATTGGGAAGGAATACCAAATCCAGTAGTGATTAGACTCCCTAATGGTGTTCAACAAGATTTATGTTGGGTGAAGCGCGACGGAGATATTTGGTTTCGGAAGAACTGGGAGAAAATTGCAAAGTTTCTGAAATTTGGATTTGTTGTGTATTTCAAATACATGGGAGGATCATGTTTTGAGCTAGAGATATTTGGACTCAATTGTTTGGAAATTGATTATTCCAACATTAAGTTAAAAAAAGAAGCTCAAGAATTTATTGAAGTGAGTGATGAAAGTGATGATGATGATGATAGTGATGAGAGTGAAATACATAAACAAAGGACACAAAATGGCAAGAGAAAAATGAATATGGATTTTGATTTTGATACTACTCAGGAAAAAACCTCAAGTATGGATAAGAAGGCCAAAGAGGGCATAAAAGTTGAAACTAATGTTGCTAGTACATCATCACAAAGAAGAAAAGGTGGTAGAAGATGTGAGACTAATAACAACAATCCAAGTTTTGATCTTACATTGACAAAAACTTATGCACAAGGCTATTTATTTAGAATACCATATGACTTTTCAAGAAATTACATGAAAGGGTTTGATGGGGTTGTAAGGGTTGTTGGTAAGAATAGGATTTGGAAGCTCAATGTGAAATATGATTGCGCAACAAAATATTCTGTTGTGAATGGTGGTTGGCATTCATTTGCCGAGGAAAATCACTTGAAAATTGGCGATGTTTGTAACTTTGAGATGATTCGAGCAGAACCATTTAAATTCATTGTTACTATTACCCGCACAAGAGAGGAACCAAGGACCAGGCGCCACTTGCGAGGTTATGAAAAAGGGAACTCGAAAGGTCCTAATGCGATGAAACAAAACGCATTCAAAAATGTTGTGAATTCCTCGTACCCGTATGTTACAAAAGAGGAGTTGAGTAGACGTGTTGCGGCGTTGAAAGTGGGTGGAAAACCGTGGCCTGTAAACTGGTATCGTCAGCCATAG 1089 0.3682 MSLYCSPPKFFKIIQNHELQNGELRVPKKFVEKYWEGIPNPVVIRLPNGVQQDLCWVKRDGDIWFRKNWEKIAKFLKFGFVVYFKYMGGSCFELEIFGLNCLEIDYSNIKLKKEAQEFIEVSDESDDDDDSDESEIHKQRTQNGKRKMNMDFDFDTTQEKTSSMDKKAKEGIKVETNVASTSSQRRKGGRRCETNNNNPSFDLTLTKTYAQGYLFRIPYDFSRNYMKGFDGVVRVVGKNRIWKLNVKYDCATKYSVVNGGWHSFAEENHLKIGDVCNFEMIRAEPFKFIVTITRTREEPRTRRHLRGYEKGNSKGPNAMKQNAFKNVVNSSYPYVTKEELSRRVAALKVGGKPWPVNWYRQP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01350 362 Gene3D - 180 298 IPR015300 -
Trre2g01350 362 MobiDBLite consensus disorder prediction 133 151 - -
Trre2g01350 362 Pfam B3 DNA binding domain 214 295 IPR003340 GO:0003677
Trre2g01350 362 ProSiteProfiles B3 DNA-binding domain profile. 200 296 IPR003340 GO:0003677
Trre2g01350 362 SMART B3_2 10 100 IPR003340 GO:0003677
Trre2g01350 362 SMART B3_2 201 296 IPR003340 GO:0003677
Trre2g01350 362 MobiDBLite consensus disorder prediction 177 196 - -
Trre2g01350 362 SUPERFAMILY DNA-binding pseudobarrel domain 196 297 IPR015300 -
Trre2g01350 362 CDD B3_DNA 199 292 IPR003340 GO:0003677
Trre2g01350 362 MobiDBLite consensus disorder prediction 122 151 - -
Trre2g01350 362 Gene3D - 5 101 IPR015300 -
Trre2g01350 362 PANTHER B3 DOMAIN-CONTAINING 6 284 - -
Trre2g01350 362 CDD B3_DNA 8 97 IPR003340 GO:0003677
Trre2g01350 362 SUPERFAMILY DNA-binding pseudobarrel domain 6 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01350 Trre-Chr2 10865268 10866873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01350 8 295 B3 DNA Binding Superfamily AT3G18990 23.739 1.90e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01350 B3 2.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01350 - - tpra:123898681 303.138