Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01349 ATGATTTGCAACGATGACCAAGAAGAAGAAGATAGTGATGATGGCTTTGTTGAGATTACCAATGAGGGTGACAATACCAAACAATCCCTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCTACTACTGCTGCTACAACTCAAGTGACAAATCCAGCAAAACGTCTTAGGCAAGTCAAGAGAAAAATTAATATGAAGGCAACCCAGCAAAATGTCTCAGGCAATTTTGCAGAGGCTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGATTCTCATCCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATCAATTGAGGATACCACATTGGTTTTCGGAAGAATACAAGAATGAGTTGTTGCAAGGGAATGCAACAATTAGAAGTGCTGGTGATGAAAAGACATGGAACATGGCATTACACTTTAATGAACGCAATAGACATTTTACAATGGGAGCTGGCTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGCGATGATTGTAAATTTGAGATGACTCAACGAGAACCACTGTCATTCACAATGACTATTGTTCCAGCTACAAAGGAACCATTGGCAGAGCAGTTTCAAGAAAACGAACGAGTCAAAGAAAAATCAAAGACATCCCCTGTAGAAGATATGCGTTATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGGTATTAAGAATTCTGAAAGTCCGAATTTACATAATAAATTCAATGTTTTTGTAACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATACAGTTGTGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATCAACATCTTGATTATGGATGGTTCGCTAAAGGTTGGCCAGAATTTGTGACAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATTATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 1089 0.3774 MICNDDQEEEDSDDGFVEITNEGDNTKQSLKKKKINSNDSATTAATTQVTNPAKRLRQVKRKINMKATQQNVSGNFAEANGNRGGSSKKAKKCLKTVDANKRSCTDSHPNENPNFTLKLSRSYVEGDQLRIPHWFSEEYKNELLQGNATIRSAGDEKTWNMALHFNERNRHFTMGAGWKSFSQEHNLQVGDDCKFEMTQREPLSFTMTIVPATKEPLAEQFQENERVKEKSKTSPVEDMRYVGNYGEGISRSCPKTHGIKNSESPNLHNKFNVFVTTLDKLVIPSEFLKRHNISNGNTVVLKVGEGTWFVEVSYNQHLDYGWFAKGWPEFVTECKVKIGDTCLFEIIDVQNHVFKVSIILDV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01349 362 ProSiteProfiles B3 DNA-binding domain profile. 114 213 IPR003340 GO:0003677
Trre2g01349 362 MobiDBLite consensus disorder prediction 35 50 - -
Trre2g01349 362 CDD B3_DNA 113 209 IPR003340 GO:0003677
Trre2g01349 362 CDD B3_DNA 275 359 IPR003340 GO:0003677
Trre2g01349 362 Pfam B3 DNA binding domain 118 209 IPR003340 GO:0003677
Trre2g01349 362 Pfam B3 DNA binding domain 275 357 IPR003340 GO:0003677
Trre2g01349 362 Gene3D - 90 214 IPR015300 -
Trre2g01349 362 Gene3D - 256 361 IPR015300 -
Trre2g01349 362 SMART B3_2 274 357 IPR003340 GO:0003677
Trre2g01349 362 SMART B3_2 115 213 IPR003340 GO:0003677
Trre2g01349 362 SUPERFAMILY DNA-binding pseudobarrel domain 110 209 IPR015300 -
Trre2g01349 362 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 214 IPR044837 -
Trre2g01349 362 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g01349 362 MobiDBLite consensus disorder prediction 1 50 - -
Trre2g01349 362 SUPERFAMILY DNA-binding pseudobarrel domain 274 356 IPR015300 -
Trre2g01349 362 ProSiteProfiles B3 DNA-binding domain profile. 266 362 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01349 Trre-Chr2 10860966 10862938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01349 129 347 REM Transcription Factor Family AT4G31690 28.125 9.99e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01349 B3 4.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01349 - - tpra:123923263 538.495