Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01348 ATGATTTGCAACGATGACCAAGAAGAAGAAGATAGTGATGATGGCTTTGTTGAGATTACCAATGAGGGTGACAATACCAAACAATCCCTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCTACTACTGCTGCTACAACTCAAGTGACAAATCCAGCAAAACGTCTTAGGCAAGTCAAGAGAAAAATTAATATGAAGGCAACCCAGCAAAATGTCTCAGGCAATTTTGCAGAGGCTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGATTCTCATCCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATCAATTGAGGATACCACATTGGTTTTCGGAAGAATACAAGAATGAGTTGTTGCAAGGGAATGCAACAATTAGAAGTGCTGGTGATGAAAAGACATGGAACATGGCATTACACTTTAATGAACGCAATAGACATTTTACAATGGGAGCTGGCTGGAAGTCATTTTCACAAGAACATAACTTGCAAGTCGGCGATGATTGTAAATTTGAGATGACTCAACGAGAACCACTGTCATTCACAATGACTATTGTTCCAGCTACAAAGGAACCATTGGCAGAGCAGTTTCAAGAAAACGAACGAGTCAAAGAAAAATCAAAGACATCCCCTGTAGAAGATATGCGTTATGTGGGCAATTATGGAGAAGGAATTTCAAGGAGCTGCCCAAAAACACATGATTCTGAAAGTCCGAATTTACATAATAAATTCAATGTTTTTGTAACAACATTAGACAAGCTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATCTAATGGAAATACAGTTGTGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATCAACATCTTGATTATGGATGGTTCGCTAAAGGTTGGCCAGAATTTGTGACAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATTATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 1080 0.3787 MICNDDQEEEDSDDGFVEITNEGDNTKQSLKKKKINSNDSATTAATTQVTNPAKRLRQVKRKINMKATQQNVSGNFAEANGNRGGSSKKAKKCLKTVDANKRSCTDSHPNENPNFTLKLSRSYVEGDQLRIPHWFSEEYKNELLQGNATIRSAGDEKTWNMALHFNERNRHFTMGAGWKSFSQEHNLQVGDDCKFEMTQREPLSFTMTIVPATKEPLAEQFQENERVKEKSKTSPVEDMRYVGNYGEGISRSCPKTHDSESPNLHNKFNVFVTTLDKLVIPSEFLKRHNISNGNTVVLKVGEGTWFVEVSYNQHLDYGWFAKGWPEFVTECKVKIGDTCLFEIIDVQNHVFKVSIILDV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01348 359 ProSiteProfiles B3 DNA-binding domain profile. 114 213 IPR003340 GO:0003677
Trre2g01348 359 CDD B3_DNA 113 209 IPR003340 GO:0003677
Trre2g01348 359 MobiDBLite consensus disorder prediction 1 49 - -
Trre2g01348 359 CDD B3_DNA 272 356 IPR003340 GO:0003677
Trre2g01348 359 SUPERFAMILY DNA-binding pseudobarrel domain 110 209 IPR015300 -
Trre2g01348 359 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 214 IPR044837 -
Trre2g01348 359 Gene3D - 90 214 IPR015300 -
Trre2g01348 359 Gene3D - 255 358 IPR015300 -
Trre2g01348 359 ProSiteProfiles B3 DNA-binding domain profile. 263 359 IPR003340 GO:0003677
Trre2g01348 359 MobiDBLite consensus disorder prediction 35 49 - -
Trre2g01348 359 SUPERFAMILY DNA-binding pseudobarrel domain 271 353 IPR015300 -
Trre2g01348 359 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g01348 359 SMART B3_2 115 213 IPR003340 GO:0003677
Trre2g01348 359 SMART B3_2 271 354 IPR003340 GO:0003677
Trre2g01348 359 Pfam B3 DNA binding domain 272 354 IPR003340 GO:0003677
Trre2g01348 359 Pfam B3 DNA binding domain 118 209 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01348 Trre-Chr2 10860966 10862938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01348 129 344 REM Transcription Factor Family AT4G31690 28.017 5.83e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01348 B3 4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01348 - - tpra:123923263 545.043