Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01346 ATGTTGTTGCAGATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTATACTTCCAAATGAGTCCCTGTGTAAAATGTATTGGGTGCAATTTGGTGATGATATTTGGCTTCAGGATTGGAAAAAGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTGTGATTTGCAACGGTGAACAAGAAGCTAAAGAGATTGATGATGACGGCAATGTTGAGATTACAAATGAGGGTGACAATACCAAACAATCCTTCAAGAAAAAGAAAATCAAGTCAAATGATAGTGCTACTACTGCTGCTACAACTCAAGTGACAAACATTGTCAATAGAAAAATTAATATGAAGGCAACCCAGCAAAAAGTCTCAGGCAATTTTGCAGAGGTTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGGTTCTCATCCCAATGAGAATCCCAGTTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATTTATCAATGTTGAGGATACCTACTTGGTTTTCGAAAGAATACATGAATGAGTTGTCGCAAGGGAATGCAACGATTAAAAGTGTTGGTGATGAAATGACATGGAACGTGGTATTACACTTTGATTTATGCAATAGAAATTTTAGAGTGGGAGCTGGTTGGAAGTCATTTTCACGAGAACATAACTTACAAGTCGGTGATGAATGTAAATTTGAGATGACTCAAAGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGGCATCGCCTATAGAAGACATGGATTATGTGAGTAATTATGGAGGAGTTTCAAGGAGCTGCCCAAAAACACATGATTCTAAAAGTCCGAATTTACATAATAAATTCAAGGTTTTTGTATCATCATTATACAAGCTGGTCATACCAAGTGAGTTCTTGAAGATACACAATATTTCTAGTGGAAGTTCAGTCGAGTTGAAAGTAGGGGAAGAAACATGGTTTGTTGAGGTGAGTTATAATCAAGATCTTGATTATGGGGAGTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGATGATTGGAGAAACTTGTTTTTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 1329 0.3634 MLLQMVPRNFVERYWKDVSNPISLILPNESLCKMYWVQFGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSVICNGEQEAKEIDDDGNVEITNEGDNTKQSFKKKKIKSNDSATTAATTQVTNIVNRKINMKATQQKVSGNFAEVNGNRGGSSKKAKKCLKTVDANKRSCTGSHPNENPSFTLKLSRSYVEGDLSMLRIPTWFSKEYMNELSQGNATIKSVGDEMTWNVVLHFDLCNRNFRVGAGWKSFSREHNLQVGDECKFEMTQREPLSFTITIVPATKEPCPEQFQENQRVKEKSEASPIEDMDYVSNYGGVSRSCPKTHDSKSPNLHNKFKVFVSSLYKLVIPSEFLKIHNISSGSSVELKVGEETWFVEVSYNQDLDYGEFTKGWKEFVRECKVMIGETCFFEMIDVQNHVFKVSIILDV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01346 442 Pfam B3 DNA binding domain 355 437 IPR003340 GO:0003677
Trre2g01346 442 Pfam B3 DNA binding domain 200 294 IPR003340 GO:0003677
Trre2g01346 442 Gene3D - 336 441 IPR015300 -
Trre2g01346 442 Gene3D - 173 298 IPR015300 -
Trre2g01346 442 Gene3D - 3 80 IPR015300 -
Trre2g01346 442 ProSiteProfiles B3 DNA-binding domain profile. 346 442 IPR003340 GO:0003677
Trre2g01346 442 SMART B3_2 197 297 IPR003340 GO:0003677
Trre2g01346 442 SMART B3_2 350 437 IPR003340 GO:0003677
Trre2g01346 442 CDD B3_DNA 351 439 IPR003340 GO:0003677
Trre2g01346 442 PANTHER B3 DOMAIN-CONTAINING 343 439 - -
Trre2g01346 442 ProSiteProfiles B3 DNA-binding domain profile. 198 297 IPR003340 GO:0003677
Trre2g01346 442 CDD B3_DNA 195 293 IPR003340 GO:0003677
Trre2g01346 442 SUPERFAMILY DNA-binding pseudobarrel domain 5 78 IPR015300 -
Trre2g01346 442 SUPERFAMILY DNA-binding pseudobarrel domain 346 436 IPR015300 -
Trre2g01346 442 SUPERFAMILY DNA-binding pseudobarrel domain 192 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01346 Trre-Chr2 10850512 10852592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01346 6 292 B3 DNA Binding Superfamily AT3G18990 26.101 8.18e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01346 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01346 - - tpra:123923263 640.188