Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01345 ATGTTGTTGCAGATGGTTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTATACTTCCAAATGAGTCCCTGTGTAAAATGTATTGGGTGCAATTTGGTGATGATATTTGGCTTCAGGATTGGAAAAAGTTTGCACGGTCGCTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTCATGTCATTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAGTGTGATTTGCAACGGTGAACAAGAAGCTAAAGAGATTGATGATGACGGCAATGTTGAGATTACAAATGAGGAGGTTAATGGAAACAGAGGAGGCAGCAGTAAGAAAGCTAAGAAATGCTTAAAAACTGTAGATGCAAATAAGAGAAGCTGCACTGGTTCTCATCCCAATGAGAATCCCAGTTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTGATTTATCAATGTTGAGGATACCTACTTGGTTTTCGAAAGAATACATGAATGAGTTGTCGCAAGGGAATGCAACGATTAAAAGTGTTGGTGATGAAATGACATGGAACGTGGTATTACACTTTGATTTATGCAATAGAAATTTTAGAGTGGGAGCTGGTTGGAAGTCATTTTCACGAGAACATAACTTACAAGTCGGTGATGAATGTAAATTTGAGATGACTCAAAGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACGAGTCAAAGAAAAATCAGAGGCATCGCCTATAGAAGACATGGATTATGTGAGTAATTATGGAGGAGTTTCAAGGAGCTGCCCAAAAACACATGATTCTAAAAGTCCGAATTTACATAATAAATTCAAGGTTTTTGTATCATCATTATACAAGCTGGTCATACCAAGTGAGTTCTTGAAGATACACAATATTTCTAGTGGAAGTTCAGTCGAGTTGAAAGTAGGGGAAGAAACATGGTTTGTTGAGGTGAGTTATAATCAAGATCTTGATTATGGGGAGTTCACTAAAGGTTGGAAAGAATTTGTGAGAGAATGCAAAGTGATGATTGGAGAAACTTGTTTTTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTATCCTAGATGTTTAG 1182 0.3646 MLLQMVPRNFVERYWKDVSNPISLILPNESLCKMYWVQFGDDIWLQDWKKFARSLRCGDLLVFQYKGGSDFHVIIFDDSKLEIDYSSVICNGEQEAKEIDDDGNVEITNEEVNGNRGGSSKKAKKCLKTVDANKRSCTGSHPNENPSFTLKLSRSYVEGDLSMLRIPTWFSKEYMNELSQGNATIKSVGDEMTWNVVLHFDLCNRNFRVGAGWKSFSREHNLQVGDECKFEMTQREPLSFTITIVPATKEPCPEQFQENQRVKEKSEASPIEDMDYVSNYGGVSRSCPKTHDSKSPNLHNKFKVFVSSLYKLVIPSEFLKIHNISSGSSVELKVGEETWFVEVSYNQDLDYGEFTKGWKEFVRECKVMIGETCFFEMIDVQNHVFKVSIILDV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01345 393 ProSiteProfiles B3 DNA-binding domain profile. 149 248 IPR003340 GO:0003677
Trre2g01345 393 SUPERFAMILY DNA-binding pseudobarrel domain 143 244 IPR015300 -
Trre2g01345 393 Gene3D - 3 80 IPR015300 -
Trre2g01345 393 CDD B3_DNA 146 244 IPR003340 GO:0003677
Trre2g01345 393 SMART B3_2 148 248 IPR003340 GO:0003677
Trre2g01345 393 SMART B3_2 301 388 IPR003340 GO:0003677
Trre2g01345 393 ProSiteProfiles B3 DNA-binding domain profile. 297 393 IPR003340 GO:0003677
Trre2g01345 393 SUPERFAMILY DNA-binding pseudobarrel domain 5 78 IPR015300 -
Trre2g01345 393 SUPERFAMILY DNA-binding pseudobarrel domain 297 387 IPR015300 -
Trre2g01345 393 CDD B3_DNA 302 390 IPR003340 GO:0003677
Trre2g01345 393 PANTHER B3 DOMAIN-CONTAINING 294 390 - -
Trre2g01345 393 Gene3D - 287 392 IPR015300 -
Trre2g01345 393 Gene3D - 127 249 IPR015300 -
Trre2g01345 393 Pfam B3 DNA binding domain 306 388 IPR003340 GO:0003677
Trre2g01345 393 Pfam B3 DNA binding domain 151 245 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01345 Trre-Chr2 10850512 10852592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01345 6 88 B3 DNA Binding Superfamily AT3G18990 36.047 2.14e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01345 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01345 - - tpra:123913547 570.466