Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01344 ATGGCCTCTCAAGAACTTAACCATGAGACTAATATTGGTGTCCACTTTATCAAGATCATTCTTCAAAATACTCTTCAACAAGGAAAATTGAGAGTACCGATAAGAAATAGCAGTGATGATCTTAAGGAGAGAAGTAGAGTTTTGTACGATAAAGTGAACAAAAAATTCAAATCTGATAAGGAATTCTTCACACGTATGATTCTCAAGACATACATGGAGAGAGATATCTTGGGCATACCAATTGAGTTTGCTAAGGCACATCTTTACAGGATGGAAGGAAGAAATGCTACACTTTTTGTTGACCAAGAAAGAACATGGAATGTTAATTTGAAGATCAAATTAAATAAACAATTTACACTTGTGGATGGTTGGAATAAATTTTGTGCTGACAATAATTTGAAACTTGGTGATGTTTGTGTTTTTATACTAAACAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAAGACATGAAGACTCCATATTTTCAAGGAAATATTACCAATAAACTATGTTAG 534 0.324 MASQELNHETNIGVHFIKIILQNTLQQGKLRVPIRNSSDDLKERSRVLYDKVNKKFKSDKEFFTRMILKTYMERDILGIPIEFAKAHLYRMEGRNATLFVDQERTWNVNLKIKLNKQFTLVDGWNKFCADNNLKLGDVCVFILNKCKGTVSFQVVIFSLEKDMKTPYFQGNITNKLC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01344 177 CDD B3_DNA 60 158 IPR003340 GO:0003677
Trre2g01344 177 Pfam B3 DNA binding domain 62 153 IPR003340 GO:0003677
Trre2g01344 177 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 162 IPR044837 -
Trre2g01344 177 SUPERFAMILY DNA-binding pseudobarrel domain 56 158 IPR015300 -
Trre2g01344 177 Gene3D - 41 161 IPR015300 -
Trre2g01344 177 SMART B3_2 63 160 IPR003340 GO:0003677
Trre2g01344 177 ProSiteProfiles B3 DNA-binding domain profile. 62 160 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01344 Trre-Chr2 10841135 10843040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01344 25 143 REM Transcription Factor Family AT4G31640 29.921 1.82e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01344 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01344 - - tpra:123894507 203.756