Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01343 ATGGATCCCCAAAACCCATCTTTTCCTTCAGCACCACCTGGTATTCCTATCCCAGTTCCAATCCTAGCTCCGAAGCAAGAGCCTCTTGACGAACCACTTGAACCGAACCTAAACAATCTTCCAAACCTCAATCTGAACCTAAATTTCAACCTCGATAACATTTCTCAAGAACAAACCCTAACCTATTCTGATGATTTTCGCCATGTGGCTGAGCTTTTCCGAAACAATTTCAGCACAGGGCTTCAACAAATTCAAAACGACGTCGTTGATGATGATGATGATCCGAATTCACGCGCCATCGTTCCTGTTCCAGACGCGCCGCGAAATGATGATAATAGTAATAATAACGCTCCGGCTGGTGAAGTTGCGGCGCAGAAGCTTCAACGGAGATATAAAGAGCTTGTTCGTGTTTCAGATCTTGGTTTACCGGATCAACGACAGTTTCGTGAGATTGTTAGGAGAACGAGAATGGTTTATGATTCAATTCGGGTTTTGGCAGTTGTTGAAGAAGAAAAGAGAGTTGATGTTCGGAGAGCGAGAAGCGATTTGAGAGCTTCTGGTATTATGAGGAGTCATGGTTTGTGGCTGAATCGCGATAAAAGAATCGTTGGCGCGATTCCTGGAGTTTGTATTGGTGATGTTTTTCTTTATAGAATGGAATTAGTTGTGGTTGGTTTACATGGTCAACCACAAGCTGGAATTGATTATTTACCTGGTAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCGGGTGGTTATGAGGATGATGTTGATCAAGGTGATGTTATTATTTATTCGGGTCATGGTGGTCAGGATAAGAATTCGAGGCAAGTTTTTCATCAGAAGTTGGAAGGTGGGAATCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTGGTGTTCGGTGTGAAGGTACTTCTTCTGCTTCTGGTAAGGTTTATGTTTATGATGGACTGTATAGGATTGTTGAATGTTGGTTTGATGTTGGTAAATCGGGTTTTGGTGTATATAAGTATAAGTTATGGAGGATTGACGGGCAAGCGAAAATGGGTAGTTCGGTTTTGAAGGAGGCTGTTATGCTTAGGAGAGATCCTTTATGTTTTAAACCCATGTGTGTTTTATCGCTTGACATTGCCAATGGGAAGGAGAGTGTTGGTATTAGACTATTTAACGATATTGATAGGAATCATGATCCAATGTGTTTTGAGTATCTTCCGAAGGCTACTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAAGACGACAGGGTGTGAATGTGTGGATGGTTGTGCGGAGGGATGCTTTTGTTTCATGAAGAATGGAAATGAGTTTCCATATAGTCAAAGCGGGCTTCTCTTGAAAGGGAGGCCGTTACTTTTTGAATGTGGTCCTTTTTGCCGTTGTCCGCCTCATTGTCGTAACCGTGTAACACAAAAAGGTCTTAAACACAGGTTGGAAGTGTTTAGATCGAGGGAGACTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCTGGCGCATTCATATGTGAGTACACTGGGGTTGTTTTGACTAGGGAGCAAGCACAAATTTTTACCATGAATGGCGATTCATTGATATATCCGAGCCGACTTTATGTTATGCTGAAGCTGAGTTTTGGGCATGGTGTACTGAGATATTTAAATTTTTGCAGAAGAACTTTCATCAGATTTCAACCTCAACAATTCGCAAGGATGAGTATATTTGCTTGTTTTGTCCAACCCTTGTTTGCTAGCAGATGGTGCTTCCCGTGGTTTTGA 1809 0.4207 MDPQNPSFPSAPPGIPIPVPILAPKQEPLDEPLEPNLNNLPNLNLNLNFNLDNISQEQTLTYSDDFRHVAELFRNNFSTGLQQIQNDVVDDDDDPNSRAIVPVPDAPRNDDNSNNNAPAGEVAAQKLQRRYKELVRVSDLGLPDQRQFREIVRRTRMVYDSIRVLAVVEEEKRVDVRRARSDLRASGIMRSHGLWLNRDKRIVGAIPGVCIGDVFLYRMELVVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDQGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRCEGTSSASGKVYVYDGLYRIVECWFDVGKSGFGVYKYKLWRIDGQAKMGSSVLKEAVMLRRDPLCFKPMCVLSLDIANGKESVGIRLFNDIDRNHDPMCFEYLPKATFPQFVFHQSGKTTGCECVDGCAEGCFCFMKNGNEFPYSQSGLLLKGRPLLFECGPFCRCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQIFTMNGDSLIYPSRLYVMLKLSFGHGVLRYLNFCRRTFIRFQPQQFARMSIFACFVQPLFASRWCFPWF 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01343 602 Gene3D - 201 361 IPR036987 -
Trre2g01343 602 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 86 540 - -
Trre2g01343 602 SMART G9a_1 199 357 IPR003105 -
Trre2g01343 602 SUPERFAMILY PUA domain-like 185 366 IPR015947 -
Trre2g01343 602 SUPERFAMILY SET domain 377 549 IPR046341 -
Trre2g01343 602 Pfam Pre-SET motif 388 485 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g01343 602 MobiDBLite consensus disorder prediction 87 118 - -
Trre2g01343 602 ProSiteProfiles YDG domain profile. 204 353 IPR003105 -
Trre2g01343 602 Gene3D SET domain 362 566 IPR046341 -
Trre2g01343 602 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g01343 602 ProSiteProfiles Pre-SET domain profile. 432 490 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g01343 602 SMART preset_2 385 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g01343 602 MobiDBLite consensus disorder prediction 1 25 - -
Trre2g01343 602 Pfam SAD/SRA domain 203 357 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01343 Trre-Chr2 10794953 10801614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01343 151 526 Su(var)3-9 homologs AT1G73100 41.053 1.85e-87 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01343 K11420 - gmx:100795514 757.673