Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01342 ATGAAACCCGAGTTATACGAAATCTCCGACGACGAATGGGAAAATCACTCTTTCAAACCCTCACGAGTCCTCAAACGACCTCGTTCTCCACCGCCGCCTCTCGACTCCTTCGCTTATAAACCTCCTTCCCAACCCCAACCCCAACCCGTTGCCTCCGACGACGACGACGACGACGATTGCGTAGTAATCAGTCAAATAACCGATAATAATAACAACAACTTTGAATGTCTCGATGATTTAGAAGATGCTGATGTGGATGATGTTGAAGCGGCTCCAACCGCGAGACCTGGAAGGAGGTTTATAATCGATGATGAGGATGAAGAGGATGATCTCGGAGGTGGTGATAATGTTGATGTGTTTGATATTGATTCAACGGAAGATGAAGTGGAGGTTGAAATTGATGAAGGGAATGAAGGTGATTTGGTTGGTAGGGCTTTGCAAAAGTGTGCGAGGATTTCTGTTGAGTTGAAGGGAGAGTTGTTTGGGTCTTCTGGAGCTGCTTGTGAGAGATATTCTGAGGTGGAATCTTCTTCAGTTAGAATCGTTACTCAGGATGATGTTGATGTTGCGTGTGGGTCTGAGGATTCGGATTTTCAACCTCTGTTAAAGCCCTATCAACTTGTTGGTGTTAATTTTTTGCTTCTGTTGTATCGGAAGGGTATTAAAGGAGCTATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACCTGCACAGTGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGTCCATCCTTTTCTGTTGTTCAATATCATGGGGCTACACGCACAGCATACTGCAAGGAATTGAACTCTCTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAACGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGTTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACACCACTTCAAAATGATCTACATGAGTTATGGTCTATGTTAGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTACTAAGTGCAGAAGATAGAGATTTAGTTAGTCGTATGAAGTCTATCTTGGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTAATGCAACAACTTGTTCAAAAGACACAGCAGGTTCAATATGTCATAATGGAAAAGCAACAGGAACATGCTTACAGGGAAGCCATCGAAGAGTATCGCGCTTTTTCACAAGCTCGGTTAACAAAATGTTCTGATATGAACTCAAAAAGTATTCTTGAAGTTCTTCCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGGAAGATAGCAAACCACCCCTTGTTGATACGGAGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGCTGCATCCAATAGGTGCTTTTGGCTTTGAATGTACTATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGATTTCTCCATTCACCGGCTTTTACTTCATTATAGTATCAATGATAGAAAGGGGATCCTTTCAGATAAATATGTTATGCTTTCTTCAAAATGTCGGGCTTTAGCAGAACTTCTTCCGTCACTAAAGAAAGGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATCTTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGACAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCCCAGATTGATAGACAAGCCGAAGACCGTTGTCATCGAATTGGACAAACAAAGCCTGTAACCATTTATAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCACAGAAGAGATCAAAGAAGGGGACATGCCTGAGAAGACCATGGGAGAGATATTGTCCGCAATATTGTTAAAATATTGA 2259 0.4152 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLDSFAYKPPSQPQPQPVASDDDDDDDCVVISQITDNNNNNFECLDDLEDADVDDVEAAPTARPGRRFIIDDEDEEDDLGGGDNVDVFDIDSTEDEVEVEIDEGNEGDLVGRALQKCARISVELKGELFGSSGAACERYSEVESSSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIKGAILADEMGLGKTVQAITYLTLLNHLHSDSGPHLIVCPASVLENWERELKRWCPSFSVVQYHGATRTAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDRDLVSRMKSILGPFILRRLKSDVMQQLVQKTQQVQYVIMEKQQEHAYREAIEEYRAFSQARLTKCSDMNSKSILEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTMDRVIEELKSYNDFSIHRLLLHYSINDRKGILSDKYVMLSSKCRALAELLPSLKKGGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESTEEIKEGDMPEKTMGEILSAILLKY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01342 752 Pfam SNF2-related domain 221 508 IPR000330 GO:0005524|GO:0140658
Trre2g01342 752 PANTHER SNF2/RAD54 HELICASE FAMILY 197 728 - -
Trre2g01342 752 Gene3D - 184 454 IPR038718 -
Trre2g01342 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 581 731 IPR001650 -
Trre2g01342 752 FunFam Protein CHROMATIN REMODELING 19 isoform A 173 451 - -
Trre2g01342 752 CDD SF2_C_SNF 568 701 - -
Trre2g01342 752 Gene3D - 543 749 IPR027417 -
Trre2g01342 752 CDD DEXHc_Snf 202 395 - -
Trre2g01342 752 SMART helicmild6 607 690 IPR001650 -
Trre2g01342 752 MobiDBLite consensus disorder prediction 25 48 - -
Trre2g01342 752 SMART ultradead3 198 403 IPR014001 -
Trre2g01342 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 428 IPR027417 -
Trre2g01342 752 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g01342 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 393 IPR014001 -
Trre2g01342 752 MobiDBLite consensus disorder prediction 1 58 - -
Trre2g01342 752 Pfam Helicase conserved C-terminal domain 578 690 IPR001650 -
Trre2g01342 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 731 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01342 Trre-Chr2 10769539 10778674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01342 222 741 RAD5 or RAD16-like Gene Family AT5G22750 26.604 5.17e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g01342 SNF2_N 3.4e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01342 K14439 - gmx:100806323 1220.68