Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01341 ATGGCTGCTTCTTCATCATCTACACCTTTCTTGGAAATTAGACAAGAAAATCAAAGTCAGATTACTCAACAACATCAATCTTCAACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGGAATCAACCTGGAACACCATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAATAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTACCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAAAGAAAGGTTTATTTGTGTCCTGAGCCATCTTGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGTACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACACATAGGGCTTTTTGTGATGCATTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTAGCAACTCATCTATTTTCCACAAGCCACATGGGTTTAACCCTAAACCAAAACCAACAACCTTCCACAAACAACATCTTAACCCTAGGTAATATTCCTTGTACACCAAAATTTGAACATCATTTAATCTCACCTTTGCATGCATCATCATCATCATTTGGTCAACAAACACAACAATCACCTCAACAACAATCAATGTCTTCTTCACCTTTTTTCATAACTGATCCAAATCAAACTTTTCAACAAGATCATCTTCAAGGACCATTCTCAAATAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGTAATACCAATAATAATACATCTTCTTCATCGGTATCGCCGTTTAACCTAAGCTTCTTTCCAAATAGTAACAACACATTGCATGATCAATTCAATAATATAAGTGAAGCTCATCATCAACATCATCAAAATGATCATCATCATCATGAAGGTTTTTCTTCACTTTTTGGTAATTCATCAATGCAACAAGAGAACATGTTATCGTCGGCGCCTCACATGTCGGCAACTGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACAACATCAAATATCAATAACAGTGGTGTAGAATCTAATGAAGGAATAAGATCAAGCATGGAAAATGAACAAAATCAACATCTACATGGTTTGATGAACTCTCTTGGGAATGGAAGCACTTCAATATATGATAATAATAATAACCTTGGTCAGTTTCATAATGTTGAGGAGAACAACAAAAAGATGTCACAACAAAGTCTTGGTAATTTGTGCTTTGGAGGGTCAGATAAATTGACTTTAGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTAATAGTACAAGTGGTGGTGGTGGTGGATTTTCACAAAGAGATCAACAATTACACTCAATGAGTGCAATGAACAACATGGATCCTAAACTGGAATCAACACAAGGGAACCAACCTTTTTGA 1617 0.3692 MAASSSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTSHMGLTLNQNQQPSTNNILTLGNIPCTPKFEHHLISPLHASSSSFGQQTQQSPQQQSMSSSPFFITDPNQTFQQDHLQGPFSNKQLHLHHGLMQLPDLQGNTNNNTSSSSVSPFNLSFFPNSNNTLHDQFNNISEAHHQHHQNDHHHHEGFSSLFGNSSMQQENMLSSAPHMSATALLQKASQIGSTTSNINNSGVESNEGIRSSMENEQNQHLHGLMNSLGNGSTSIYDNNNNLGQFHNVEENNKKMSQQSLGNLCFGGSDKLTLDFLGVGGMVRNMSNSTSGGGGGFSQRDQQLHSMSAMNNMDPKLESTQGNQPF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01341 538 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Trre2g01341 538 Gene3D Classic Zinc Finger 55 120 - -
Trre2g01341 538 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Trre2g01341 538 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Trre2g01341 538 SMART c2h2final6 148 168 IPR013087 -
Trre2g01341 538 SMART c2h2final6 72 94 IPR013087 -
Trre2g01341 538 SMART c2h2final6 113 143 IPR013087 -
Trre2g01341 538 MobiDBLite consensus disorder prediction 1 41 - -
Trre2g01341 538 MobiDBLite consensus disorder prediction 261 297 - -
Trre2g01341 538 MobiDBLite consensus disorder prediction 1 56 - -
Trre2g01341 538 FunFam protein indeterminate-domain 12-like 51 119 - -
Trre2g01341 538 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Trre2g01341 538 MobiDBLite consensus disorder prediction 357 376 - -
Trre2g01341 538 MobiDBLite consensus disorder prediction 357 371 - -
Trre2g01341 538 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Trre2g01341 538 MobiDBLite consensus disorder prediction 405 428 - -
Trre2g01341 538 Gene3D Classic Zinc Finger 126 205 - -
Trre2g01341 538 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 510 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01341 Trre-Chr2 10756261 10761096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01341 42 509 IDZ Gene Family AT2G02070 47.992 8.31e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01341 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01341 K25870 - gmx:100806198 632.484