Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01335 ATGGCAGCATCATTTTCAGCTGCTTCTTTCTTTACAATCACTGAAGAAGATCAGAATCAGATGAATCAACAACAAAATTCTTCAACACCATCATCATCAACAACTCCAACTGCACCACCACTTCAAAAGAAAAGAAGAAACCAACCAGGAACACCAAATCCAGATGCAGAAGTGGTAGCACTATCTCCCAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTCCAAAGAGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTACCTTGGAAACTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATGTGTGTCCTGAGCCAACATGTGTTCACCATGACCCTTCAAGGGCACTTGGTGACCTCACTGGAATTAAGAAACACTTTTTTAGAAAACATGGTGAAAAAAAATGGAAGTGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAAGGAGTATAGATGTGATTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCTGAAGAAAGTTCAAGACAACCACAATTACCAAACCAAATCACCAATGCTACTTCCATTAATAACTCCCACCTATTTGGAAACATTAGCAACAACATATCCTTAGCCTTATCTCAAATTTCACCACAAAACATCTCTTCTATCCATAACCAAAACGACAACAACCAATCCACTGAAATCTTGCGTTTTGGCAACACAAGAACTTCACAATTTAACCAAAACATTCTATCTACACCCCCACAACAAACCCTTCACACCCCTCCATTTAATTTCACCACACAACAACCAAATCAAAATTACCATAATGACCATCAATCTCAAACATTCCAAGGATTAATATCATTGTCTCAACTCAACAATAACAACAACATGTTTTCTGAAAATTTCAACAATGAAGGGACAAATAATTTCTTTTCTGAAAATTCTATAATGTGTGATCCTAATCATCCAAACCAAACAAGTCCTATCTCTCCTCACATGTCAGCAACAGCTTTGCTACAAAAAGCTTCTCGAGTTGGTTCAACTTCAAGCAATAACAACAACAATGTTTCTTCTTCTTTAGAAACAAAAGTTGTTGGTGGTGGTTATGATGGACTAAGTACTAGAGATTTTCTTGGAGTTGGACAAATTGTTATGAGAAATGTGAATGGAGGAGTTGGTCAAAGAAGTCAACGCAACTTGGAAACAGAGAAAAATGGATATTTTGGTGTGGGAGGTAACTTTGACAAGTTTGAGTGA 1335 0.3738 MAASFSAASFFTITEEDQNQMNQQQNSSTPSSSTTPTAPPLQKKRRNQPGTPNPDAEVVALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAEESSRQPQLPNQITNATSINNSHLFGNISNNISLALSQISPQNISSIHNQNDNNQSTEILRFGNTRTSQFNQNILSTPPQQTLHTPPFNFTTQQPNQNYHNDHQSQTFQGLISLSQLNNNNNMFSENFNNEGTNNFFSENSIMCDPNHPNQTSPISPHMSATALLQKASRVGSTSSNNNNNVSSSLETKVVGGGYDGLSTRDFLGVGQIVMRNVNGGVGQRSQRNLETEKNGYFGVGGNFDKFE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01335 444 Gene3D Classic Zinc Finger 126 206 - -
Trre2g01335 444 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Trre2g01335 444 SMART c2h2final6 148 168 IPR013087 -
Trre2g01335 444 SMART c2h2final6 72 94 IPR013087 -
Trre2g01335 444 SMART c2h2final6 113 143 IPR013087 -
Trre2g01335 444 MobiDBLite consensus disorder prediction 1 49 - -
Trre2g01335 444 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Trre2g01335 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Trre2g01335 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 416 IPR031140 -
Trre2g01335 444 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Trre2g01335 444 Gene3D Classic Zinc Finger 53 119 - -
Trre2g01335 444 MobiDBLite consensus disorder prediction 1 57 - -
Trre2g01335 444 FunFam protein indeterminate-domain 12-like 51 119 - -
Trre2g01335 444 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01335 Trre-Chr2 10706447 10710707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01335 27 407 IDZ Gene Family AT5G66730 48.544 2.39e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01335 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01335 K25870 - gmx:100807789 445.277