Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01333 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTTAGACAATATGTTAGATCAAAGGTTCCTCGTTTAAGATGGACACCAGAACTTCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGTGGTCATCAAAAGGCTACCCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTAACAATTTCACATGTCAAGAGCCATTTGCAGATGTATAGGAGCATGAAAGGTGAATCATGTAAACAAGATAGGACTATATCCGTACATAAAAGACCATCTTTTCAGGAGCATGATGATGGGTTTGGAGATGAATCTATTGGAAAGGAATCTGATTCTCTCTATAGCTACACTAATTTCTCCCCAAAAAGAGCTAGAATCGAGAAGAAAAGTTCGTTCTCAGGAATCATACAATGCAGGGAAAGAATATGTGAAGCAGTTACAAATCCATACACAACTTTTTATGATTATGTGCAGGACATGGTTCAGCAACAGCAGAAGGGAATAAAAGAGATTTGTGTTGCTTCGCAATATTGCACAATTTTTCCTATGCTACCAAAACAAGAAACTGATTTGCTCCAGGTTACAAAATTAAATGAAAAGAAGCATGTGAATGGCAAGATTAAGAGTGTACGTGCAGAAGATGAAGTTATAAAGGGTTGTGAGTTGTCATTATCAATTTCATTGCCCCATCTTTCACCTCAAAGAAGTAATGTTTCTTCAACCAATGATATGAGAGACTCTGGATTTTGTAACTTTATGGGTTGTTCCAATGTCCAAAACAGAATTAATTTGGACCTATCTTTAGCCATTTGA 807 0.3717 MGSCGREGVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGESCKQDRTISVHKRPSFQEHDDGFGDESIGKESDSLYSYTNFSPKRARIEKKSSFSGIIQCRERICEAVTNPYTTFYDYVQDMVQQQQKGIKEICVASQYCTIFPMLPKQETDLLQVTKLNEKKHVNGKIKSVRAEDEVIKGCELSLSISLPHLSPQRSNVSSTNDMRDSGFCNFMGCSNVQNRINLDLSLAI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01333 268 Gene3D - 18 75 - -
Trre2g01333 268 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Trre2g01333 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Trre2g01333 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Trre2g01333 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 119 IPR046955 GO:0003700
Trre2g01333 268 FunFam Myb family transcription factor 17 75 - -
Trre2g01333 268 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01333 Trre-Chr2 10683581 10687774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01333 1 74 G2-like Transcription Factor Family AT1G14600 72.152 1.36e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g01333 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01333 - - gmx:100810994 334.339