Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01328 ATGGAAAAATTAGCTCCTCCTCTTCTTCCTCTTCATCCTCCTATGTTATCAAATCCATTTTATAATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACATCCCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGATTCAATTCGATTCACCGCCAAATCCACAGTCTCACAACAACAGCACAGCGAAGAAACTCTCAAATTGAATCTCGGCGGTGGCGGTGTAAGCGGCGGAGTTGCAAACAGCGGAGTTACAAACAGAGCAAACAAACGAGTACGATCAGGGTCTCCAACAGCATCATATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTATCAAAAGCTAAGGATTATCATCGTCGTCATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAAGCGTTGTTAGGGAATCAAATGCAAAGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTATTGGAATTTGATGAAGGGAAACGGAGTTGTAGAAGGAGACTTGCTGGACATAATCGTCGCCGGAGAAAAACTCAACCGGATGAGGTTGCTACTTCTTCTTCTCCTCCGTTGAATCAGCAAGTTGTGGCGGCTGCTGCTAATTTGGAAATTTTTAATTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAACAGCTTGTACAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACAGCGAAGTTGCTGGACGTTGGTAATAATTTGAATGGGAAAAATGATACCGTGCCAATGCAAACTTCATCTCCGTATCATCATCGTGATGATCAACCGAACAGTGTCCCCTCTGCTCCGTTAACTATGGACTTACTTGCTGTTCTTTCCACCACTCCATCCACTCCTGCTCAAAATGGCGGCACCAAGTCCGCAACTAGTGCTGATCAGATGAGAGAACAACAATTCACTTCAGTTGGTGGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGTGTTAATTTGCCATTGCAACTTTTTAACTCCTCACCAGAAGATGACAACCGGTCAAAAAAGCCATCTTCGCGAAATTATTTTTCATCGGAAAGTAGTAACCCCGTGGACGAGAGGTCGCCGTCATCATCTCCTAATGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGGAATGGAGGTCTCAATTCTACTAGTATTACGACTAGAATGGGAGTCAATGCAAATAAGGAAACTAGTCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATCCAACAAACTAGTTCAATTCAAAGTGTTCCGTTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACACAGGATCGTACTGGGAGAATAATGTTTAAATTATTTGACAAGCATCCTAGCCATTTCCCAGGAACATTACGATCACAGATTTACAATTGGCTTTCTACTCGACCATCAGACTTGGAAAGTTACATAAGGCCCGGCTGTGTCGTCCTATCAATTTATGCTACAATGTCTTCTGCTGCCTGGGCGCAACTAGAAGAAACCTTCCTCCAACGTGTTCATTCTTTAATTCATAACTCAGATTTTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGAAGTCAGTTAGCATCGCACAAAGATGGAAAGATACGCATGTGTAAGCCATGGGGAACATGGAGGTCTCCAGAGTTGATATCAGTGTCCCCTTTGGCGATTGTTAGTGGACAAGAAACCTCTATGTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACAAAGATTCATTGCACTGGTGCTGATGGTTACACATCATCAGAAGTTATAGGATCTGAAAATCCTGGTATGATCTATGAAGAGATAAAGTTGGGTGGTTTTAAAGTTCAGAATACATCTCCTGGTGGTGCTCTAGGTCGCTGTTTCATCGAGGTTGAAAATGGTTTCAAGGGCGACTGTTTTCCAGTGATAATAGCCGATGCATCCATTTGCCAGGAATTGAGACCGCTTGAGTCTGAATTTGACGAAGAGGAAAAAGTATGTGATGCCATTTCAGAGGAACATGAATATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTCTGAATGAGCTTGGCTGGCTGTTTCAAAGGGAAAGGTTCTCAAATGTGCACGAGGTTCCAGATTATTCACTTGACAGATTCAAATTTGTACTAACGTTTTCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATATACTGGTTGATAAACACTTCAAAGGAGAAAGGTTGTCAACAGGGTTGATGGAGATGCTCAAAGCAATCCAACTCCTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATTTGCTCATCCACTATTGTATACCAAGCAAAAACGATACGTCCAAGAAATATATATTTCCACCAAATCTTGAGGGCCCTGGTGGTATTACTCCCTTGCATTTGGCTGCATCTACATCAGATTCAGAGGGTGTTATTGACTCTTTAACAAATGATCCACAAGAGATTGGGTTGAAGTGCTGGGAGACCCTTGTGGATGAAAGTGGGCAGACTCCACATGCCTATGCTGTGATGAGAAATAATTACTCTTACAATATGTTGGTTGCCCGTAAACGTTCTGATAGACAAAGAAGTGAAGTTGCAGTCAGAATCGACAATGAGATACAGCTCCCATCACTCGGAGTTGAGCTTATGCTAAAGCGAATTAACCAAGTTAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCTATTGCAGAAGTTCGCTCCAAAAGAAAGTTTTCCGGTTCACGGAGCTGGCTTCACACGCCATTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTCTGTGTTTGTGTGTTATTCCGTGGAACTCCTTTCGTAGGCTCAGTTGCTCCCTTCAGGTGGGAAAACTTGGATTATGGCGCACTGTAA 3069 0.421 MEKLAPPLLPLHPPMLSNPFYNSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSIRFTAKSTVSQQQHSEETLKLNLGGGGVSGGVANSGVTNRANKRVRSGSPTASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVATSSSPPLNQQVVAAAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNGKNDTVPMQTSSPYHHRDDQPNSVPSAPLTMDLLAVLSTTPSTPAQNGGTKSATSADQMREQQFTSVGGERSSGSSQSPNDDSDCQEDVRVNLPLQLFNSSPEDDNRSKKPSSRNYFSSESSNPVDERSPSSSPNVVEMNFGLQGGNGGLNSTSITTRMGVNANKETSQSHSCTTIPLDLFKGSKSNNMIQQTSSIQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRSQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSAAWAQLEETFLQRVHSLIHNSDFDFWRNGRFLVYSGSQLASHKDGKIRMCKPWGTWRSPELISVSPLAIVSGQETSMSLKGRNLSAPGTKIHCTGADGYTSSEVIGSENPGMIYEEIKLGGFKVQNTSPGGALGRCFIEVENGFKGDCFPVIIADASICQELRPLESEFDEEEKVCDAISEEHEYNFGRPKSRDEALHFLNELGWLFQRERFSNVHEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDILVDKHFKGERLSTGLMEMLKAIQLLNRAVKRKYISMVDLLIHYCIPSKNDTSKKYIFPPNLEGPGGITPLHLAASTSDSEGVIDSLTNDPQEIGLKCWETLVDESGQTPHAYAVMRNNYSYNMLVARKRSDRQRSEVAVRIDNEIQLPSLGVELMLKRINQVKRVGDSCSKCAIAEVRSKRKFSGSRSWLHTPFIHSMLAVAAVCVCVCVLFRGTPFVGSVAPFRWENLDYGAL 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01328 1022 SUPERFAMILY SBT domain 107 188 IPR036893 GO:0003677|GO:0005634
Trre2g01328 1022 MobiDBLite consensus disorder prediction 301 417 - -
Trre2g01328 1022 MobiDBLite consensus disorder prediction 374 417 - -
Trre2g01328 1022 Pfam SBP domain 109 182 IPR004333 GO:0003677
Trre2g01328 1022 Gene3D - 100 170 IPR036893 GO:0003677|GO:0005634
Trre2g01328 1022 FunFam Squamosa promoter-binding-like protein 14 100 170 - -
Trre2g01328 1022 SUPERFAMILY Ankyrin repeat 769 908 IPR036770 -
Trre2g01328 1022 MobiDBLite consensus disorder prediction 173 195 - -
Trre2g01328 1022 Gene3D - 755 945 IPR036770 -
Trre2g01328 1022 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 790 IPR044817 GO:0003677
Trre2g01328 1022 MobiDBLite consensus disorder prediction 301 344 - -
Trre2g01328 1022 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Trre2g01328 1022 MobiDBLite consensus disorder prediction 263 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01328 Trre-Chr2 10661563 10667060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01328 20 1022 SBP-box Gene Family AT1G20980 51.469 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre2g01328 SBP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01328 - - gmx:100812180 1396.33