Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01320 ATGGACAAACCGTACGATGCAGTCAAAGATGTCACAAAGAAAAAAGAGCTTTGGAGAGTTGGAGTTGTTGTTGATGATATTTGGATTACCTACAAAGGAGGGAGTGAGGAACATATTGAACTACTGTTGAGGGATGTTAAGGGAGATACCATACAGGCTACAATCCTTCGCGATGACATTGCTAAGTGGAAGGACAAATTGAAGGGAGGAAAAACATATTCCATGCGTAACTTTCGTGTTACTAAAAATGAGGGTGGATTTAAGATGACTCCTCACAACTTTATGTTGACCTTTGTTGGAACGACGACGAAAGTTGAAGAGATTGTTATGCCTGAAATTCCTGCAACACTTTTTAACTTTAAGGACTTTGCAGAAATTTTGGCTGATGTTATTGGTGTTGTGCATACTGTTGGCAAGTGTGTAAGTCCTACAAATACCAGGAAAGGAAGTGCTGCTTTTATTCTTTCTGATTTAAGCCATCACCAAATTGATTGCACTCTTTGGGATGCAATGTCTGTGAAATTTCTTGATCACATCAACAGCAGACCTGACTTTGGTCCTGTAGTGCTTATTATGAAACATGTTCGGGTGAAAGAACCCCAAGGTATCTATAACATACAACTGTCAAATGTTTGGGATGGAACAAAACTGCTGTTTGATGAAAACATTCCTGAAATTAAAACTTTCAAAGATAGCTTGCCAAAGAATGTGGATTATAGCACCCAACAATCTGCTGCTATATCTACTTCAACCCAAATCTACACACAAGGTTCTGTGGGAACTCAGTATAACTCGGATGAGTATTTCATGAAGGATGCTCAGGTTGTTCGCCTTGCAGATATGAAAAAGATGAATGAGGACACGTTGTGTGTTTGTGTTGTTACTACTTCACACGTTAAGCTTTCGTCACAGGGATGGTATTTCATGAGTTGTACTGAATGCCAGACAAAGGCTGAAGGAAATGAGCCCCCTTTTGTTTGTAAAAAGGGCCACAAAACAACTGATCCTGTCATCAAGTACAAGTTGGATGTTGAGGTAGAAGATGTAGATGATGAAGAAGAAACTGCAAAATTTGTCTTTTGGGATAGTACACTCAATGACTTACTTGGAATCACTGCAAAGGATTTGATTAAATGCATGTGTTAA 1146 0.3901 MDKPYDAVKDVTKKKELWRVGVVVDDIWITYKGGSEEHIELLLRDVKGDTIQATILRDDIAKWKDKLKGGKTYSMRNFRVTKNEGGFKMTPHNFMLTFVGTTTKVEEIVMPEIPATLFNFKDFAEILADVIGVVHTVGKCVSPTNTRKGSAAFILSDLSHHQIDCTLWDAMSVKFLDHINSRPDFGPVVLIMKHVRVKEPQGIYNIQLSNVWDGTKLLFDENIPEIKTFKDSLPKNVDYSTQQSAAISTSTQIYTQGSVGTQYNSDEYFMKDAQVVRLADMKKMNEDTLCVCVVTTSHVKLSSQGWYFMSCTECQTKAEGNEPPFVCKKGHKTTDPVIKYKLDVEVEDVDDEEETAKFVFWDSTLNDLLGITAKDLIKCMC 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01320 381 Pfam Domain of unknown function DUF223 40 131 IPR003871 -
Trre2g01320 381 Gene3D - 3 107 IPR012340 -
Trre2g01320 381 Gene3D - 112 245 IPR012340 -
Trre2g01320 381 SUPERFAMILY Nucleic acid-binding proteins 119 237 IPR012340 -
Trre2g01320 381 SUPERFAMILY Nucleic acid-binding proteins 6 104 IPR012340 -
Trre2g01320 381 CDD RPA1_DBD_B_like 129 234 - -
Trre2g01320 381 CDD RPA1_DBD_A_like 19 103 - -
Trre2g01320 381 Gene3D - 254 380 IPR012340 -
Trre2g01320 381 SUPERFAMILY Nucleic acid-binding proteins 280 379 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01320 Trre-Chr2 10601971 10603694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01320 18 376 Core DNA Replication Machinery Family AT5G08020 25.127 2.75e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01320 - - tpra:123884216 437.573