Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01313 ATGGGGAAAAAAGAAGAATCAAATCCATTTAGCAGACCTTACAATTTTACGATGCCTCAAGATCAAACTCCAAACAACGCCCTACCACATTGGTCAACAAGTATGCAGTCTTATTACAATCCCGGCTCTACTCCAACCCCCTTTTATAATCAATTTGCAGCTGGTCCTTACTTGTATCATCCGTACATGTGGCAAAATCAGGCAAACAATGCACTACTTCAATGCGATGCTTTACATGATCCCGCGAGGCTCTCCAATAAACCTCATGTAGCTGAGGATGCTGCACTGGCCTTTGCAAAAGTGGTACATAGGAATCTTGGCGAAAGAAACCCAGACTTTAACAAATTATTTTCTGGAAACTTACATCCTTTAAGTTTAACAAGTGGGGTATCAAGAGAATGTGGAAACCAATCTTCAGCACCAAAAGATGACAAAGATGGAGCCTCAACGAGTGCAGCAAGTGGAAGCAAGAGATCGTCAGATGAAAACCAAGATGACACTAACAAAGACTTTCCTTTAAGTAAGAAGCAGAAATCTGACTTGATTATTGGGGATGAAAATCCATCTGGGCTGACTCAGAATTTGGAGACAGTCGTCAAGGAATCTGATGCTGATGTTGAAGCTGATGCTCAACTAAAATATACGGAAGACGATGATATAAGAAAAGAAAGAAAAAGACAGTCAAACAGGGAATCAGCTAAGAGATCAAGGATAAGGAAACAGCAAGAATGTGAAGAGCTATGTAAAAATATAGACACTCTTAAGGATGAAAATTCAGTCTTAACACAAAGGCTCGTTGCGCTTTCTGAGGAATGTTTGGAGCTCACCAATGAAAATGAATCCATTCAGGAAGAGCTAATTAAGAAGTATGGACGCGAATCAATTCAAGATCTATTGCTCCTCATGAAGCCTGCTTGA 918 0.402 MGKKEESNPFSRPYNFTMPQDQTPNNALPHWSTSMQSYYNPGSTPTPFYNQFAAGPYLYHPYMWQNQANNALLQCDALHDPARLSNKPHVAEDAALAFAKVVHRNLGERNPDFNKLFSGNLHPLSLTSGVSRECGNQSSAPKDDKDGASTSAASGSKRSSDENQDDTNKDFPLSKKQKSDLIIGDENPSGLTQNLETVVKESDADVEADAQLKYTEDDDIRKERKRQSNRESAKRSRIRKQQECEELCKNIDTLKDENSVLTQRLVALSEECLELTNENESIQEELIKKYGRESIQDLLLLMKPA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01313 305 MobiDBLite consensus disorder prediction 128 190 - -
Trre2g01313 305 MobiDBLite consensus disorder prediction 128 158 - -
Trre2g01313 305 SMART brlzneu 217 281 IPR004827 GO:0003700|GO:0006355
Trre2g01313 305 SUPERFAMILY Leucine zipper domain 220 277 IPR046347 GO:0003700|GO:0006355
Trre2g01313 305 MobiDBLite consensus disorder prediction 10 26 - -
Trre2g01313 305 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 224 239 IPR004827 GO:0003700|GO:0006355
Trre2g01313 305 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 219 282 IPR004827 GO:0003700|GO:0006355
Trre2g01313 305 MobiDBLite consensus disorder prediction 1 26 - -
Trre2g01313 305 Coils Coil 237 285 - -
Trre2g01313 305 Gene3D - 210 279 - -
Trre2g01313 305 MobiDBLite consensus disorder prediction 202 239 - -
Trre2g01313 305 Pfam G-box binding protein MFMR 1 67 IPR012900 -
Trre2g01313 305 MobiDBLite consensus disorder prediction 159 182 - -
Trre2g01313 305 PANTHER G-BOX-BINDING FACTOR 3-RELATED 17 292 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre2g01313 305 CDD bZIP_plant_GBF1 222 272 IPR045314 GO:0003700|GO:0006355
Trre2g01313 305 Pfam bZIP transcription factor 219 279 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01313 Trre-Chr2 10561367 10566995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01313 1 298 bZIP Transcription Factor Family AT4G36730 29.206 5.53e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g01313 MFMR 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01313 K09060 - gmx:102665715 287.345