Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01299 ATGGAACGAGACGATGACTTCAACAACAACAACCGCAGCGACAACAAAAACAAAAACAAAATTGGGGATGATGAAATATTTGTATCTAATTCAAAAGGAGAAACTCTTTTTGATTTTTCACCCAAAAAAAGCATAGCTGAGAGAAGAGGTTTCAATAACAATGTTGCAAAGATCAACACAAGAATTTCTCATTTTGGTGCAACAACTCCTTTGGTTTCTCCTGCAGTTCAATCAGCACGTCTCACAATACCACCTGGAATTAGTCCAACTGCTTTGCTTGAATCCCCAATCATGCTTCCTAATTCTATGGTCATGCCGTCTCCCACGACGGGGAGTTTTGCCATGCTTCCACCTCTAACTAATGAAAGATCAATGCTCACTTCTTTCACACATGAACAAAGGAAATTAGATGTGCCTGCTGCCTCTGAAATTGCTTCATCTTTCAAATTCAAGCCTCAAGCCAATTTGGATCCTAATTCTTTGTCTACATGTTATGATTCTCTTAATCAGGTTTCTAGTAATTTTCACATGATGACTGAAGGAGATAGAGACAACCAAATGCTTTTTGAAGATCAACAAATGTTAGATTTTTCATTCTCAGAAGATTTTTCAAATGACTATTCAGCTAGAAATAGTGGAGTTCATGTTGATGTGCCAATCTCTTGTTCTGAAGAAACTAGTGATGAAAGCACTTTGCCTGAAAATTCTATCAATGATGATGATATAGAAGATGAACATAAAGAGATAACTCATGCAACAGGAGCAAAAATCTCAGAGGATGGTTATAATTGGAGAAAGTATGGACAAAAACAGGTGAAAGGTAGTGAATATCCAAGAAGCTACTATAAATGTACTCAGACTAATTGTCATGTCAAGAAAAAGGTCGAAAGATCGCACGACGGCCATGTAACTGAAATTATTTACAGGGGTAATCATAACCATTCAAAACCACATTCTAATGTGGCTGAGCTTTTGGATTCAGATTCTACTGTTACTGAGCATTTGGATTCTACAAAGAGATTTCAATCTATTGGTATGTCGGAATCGAACAACGCTCTAGAGCATTCTTCCGGACAAGGTAATCATGATGGTGATAATGATGGAGCCACTCAAGAAGTTTTACCACTTCAAGGTGATGCTGAAGAAGCTGAGTCAGAATCAAGAAAAAGGAAGAGAGAGAGCTATCCAGTAGTTGAAACAATGGTACCATCGAGGGCTATTCGTGAGCCACGAGTGGTAGTGCAAGTTGAGAGTGAAGTGGACATACTCGACGATGGTTACCGCTGGCGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGTTACTACAAATGCACAACTGCTGGATGTAATGTAAGGAAACATGTGGAAAGGGCTGCACACAATCTAAAATATGTGATTACTACTTATGAGGGAAAACATAATCATGATGTTCCGACCGCAAGAAACAACAATCATTTAAGCGCAAACGATGTTGCTTTGTCTTCCAGTGGTGCTAATGTTCATGCCTCCGGTATCCCAAAGTCCGAAACTCATCAAACTCTTAGACCTCATTTTGATAGAAAACCAGATTTTACCAATGAGTTTCTAAGATCAAGTTTAATGGGAAGTTTTAGTAATGATATGAAGTTTGGATCTTCTTCCATATCCCAAATGAACTATTCTTCCTTGAATGGTATCATACCTTTTGGAGGCTATGGAACAAATCCTGACTCTGCTGTTGGGCCTCATGCCGGACCTATTGCCTCAATTTTCCCCGAATTTCCAATGCCGCTGCCAATGAATCTTCCCTCGTCTGGAATTAATTTCAACTATGCACAACCAATGAGTTCGGTCCGGTCTTATCTTTCAGGTCAAGTTATGATGGACATTGATGGAGGGTTCCTAAGGCCTAAACAGGAGCCATCTGTTGATCATGCAAGTTCCTCGCGCGCTCCACCATCAACATCACCATCACCATCACAATCCATTTATCAAAGTGCCATGCAAAATTTCTCTTCATAA 2016 0.3958 MERDDDFNNNNRSDNKNKNKIGDDEIFVSNSKGETLFDFSPKKSIAERRGFNNNVAKINTRISHFGATTPLVSPAVQSARLTIPPGISPTALLESPIMLPNSMVMPSPTTGSFAMLPPLTNERSMLTSFTHEQRKLDVPAASEIASSFKFKPQANLDPNSLSTCYDSLNQVSSNFHMMTEGDRDNQMLFEDQQMLDFSFSEDFSNDYSARNSGVHVDVPISCSEETSDESTLPENSINDDDIEDEHKEITHATGAKISEDGYNWRKYGQKQVKGSEYPRSYYKCTQTNCHVKKKVERSHDGHVTEIIYRGNHNHSKPHSNVAELLDSDSTVTEHLDSTKRFQSIGMSESNNALEHSSGQGNHDGDNDGATQEVLPLQGDAEEAESESRKRKRESYPVVETMVPSRAIREPRVVVQVESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCNVRKHVERAAHNLKYVITTYEGKHNHDVPTARNNNHLSANDVALSSSGANVHASGIPKSETHQTLRPHFDRKPDFTNEFLRSSLMGSFSNDMKFGSSSISQMNYSSLNGIIPFGGYGTNPDSAVGPHAGPIASIFPEFPMPLPMNLPSSGINFNYAQPMSSVRSYLSGQVMMDIDGGFLRPKQEPSVDHASSSRAPPSTSPSPSQSIYQSAMQNFSS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01299 671 MobiDBLite consensus disorder prediction 631 671 - -
Trre2g01299 671 MobiDBLite consensus disorder prediction 640 671 - -
Trre2g01299 671 MobiDBLite consensus disorder prediction 350 395 - -
Trre2g01299 671 MobiDBLite consensus disorder prediction 1 22 - -
Trre2g01299 671 ProSiteProfiles WRKY domain profile. 253 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 94 506 IPR044810 GO:0003700
Trre2g01299 671 MobiDBLite consensus disorder prediction 381 395 - -
Trre2g01299 671 SMART WRKY_cls 258 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 SMART WRKY_cls 423 482 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 FunFam WRKY transcription factor 33 410 476 - -
Trre2g01299 671 Gene3D WRKY domain 410 476 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 FunFam WRKY transcription factor 246 318 - -
Trre2g01299 671 Pfam WRKY DNA -binding domain 424 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 Pfam WRKY DNA -binding domain 259 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 Gene3D WRKY domain 244 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 ProSiteProfiles WRKY domain profile. 418 483 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 MobiDBLite consensus disorder prediction 350 366 - -
Trre2g01299 671 SUPERFAMILY WRKY DNA-binding domain 254 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g01299 671 SUPERFAMILY WRKY DNA-binding domain 416 483 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01299 Trre-Chr2 10432304 10437349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01299 36 486 WRKY Transcription Factor Family AT5G56270 41.016 1.67e-92 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g01299 WRKY 8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01299 K18835 - gmx:100813723 713.761