Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01296 ATGTCTCCTCGTCCTTCTTTTCACAAAATTATTCTTCCAACAACCCTTCAATCTAGACAATTGAGGATTCCGGATAACTTTCTGAAGAAACATGGGTCCCATCTTTCGAATGCCGCAACCCTTACTGTTCCTGATGGCACCGTCTGGCGTATAGGATTGAAAAGGGTCGACAACAGAATTTGGCTTAGTGATGGTTGGCAGGATTTTGTTCAACGCTACTCCATTGGCATTGGATACTTTCTAGTATTCATGTATGAAGGGAATTCAACCTTCATCGTTCATATGTTTAATATGAGTACCGCTGAGTTAAACTATCAATCAACCATGCGAAGCCAAGGGCCTTGCTATTCAAATTATCATCCTATTTTTGAAGAAATGGAAGATATTGATTCCTTTGAATTCCTGGATTCATCACCTTCAAACCTTACTCCTGGTGCTATGGATCAACTGACACCAGGGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGCGGGTCTAAACTCAACCGCGTTAACTGGGGAGATATCGGTGGTGCTCTGTCTTCAAAGGTTGCCATTCGGTCAACCAAAGATGTAGGTGTTCAGTTCAATGCTAATGAGTTCAAAAAGTCTACCGAAGAAGTGAAATTGCGCTATACTAATGAGGAAGGGGTTAATAATAGTGATACTAAGAAAACTCCAAGAAGGAAGCGGAAATTAGATCCAAATGCACATGAAGCCGCTGCTGAAAATGATGAGGATGGAGATATACGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAATCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGGCAAAAACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGAATTTGAATGGTGTTTCAGGATTCATTAAGCTTCAGACCTCCGATGCTAGACAGTGGCCTGTTCGATGCCTTTATAGAGGAGGCCGAGCAAAGTTAAGTCAAGGATGGTATGAATTTACAGTAGAGAACAATTTAGGGGAAGGTGACGTCTGCGTTTTCGAGCTGCTTAGAACCAGAGATGTAGTGCTGCAAGTTACTTTGTTTCGTGTAAAAGAGGATGAATCAGGGTTATTCAACCCTTCTATGCAGCCGACCCAAAATGTGAGCCATGCGAAACTGTTGAACCCTCACTTACAGCACCGTGTTAGCTCAACTAAATCGGCTAAAGTTTAG 1272 0.4167 MSPRPSFHKIILPTTLQSRQLRIPDNFLKKHGSHLSNAATLTVPDGTVWRIGLKRVDNRIWLSDGWQDFVQRYSIGIGYFLVFMYEGNSTFIVHMFNMSTAELNYQSTMRSQGPCYSNYHPIFEEMEDIDSFEFLDSSPSNLTPGAMDQLTPGKNHTPSLQNLFNGGSKLNRVNWGDIGGALSSKVAIRSTKDVGVQFNANEFKKSTEEVKLRYTNEEGVNNSDTKKTPRRKRKLDPNAHEAAAENDEDGDIRYRFYESASARKRIVTAEERERAINEAKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTSDARQWPVRCLYRGGRAKLSQGWYEFTVENNLGEGDVCVFELLRTRDVVLQVTLFRVKEDESGLFNPSMQPTQNVSHAKLLNPHLQHRVSSTKSAKV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01296 423 ProSiteProfiles B3 DNA-binding domain profile. 289 384 IPR003340 GO:0003677
Trre2g01296 423 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
Trre2g01296 423 Pfam B3 DNA binding domain 292 382 IPR003340 GO:0003677
Trre2g01296 423 SUPERFAMILY DNA-binding pseudobarrel domain 282 383 IPR015300 -
Trre2g01296 423 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Trre2g01296 423 MobiDBLite consensus disorder prediction 223 246 - -
Trre2g01296 423 MobiDBLite consensus disorder prediction 214 246 - -
Trre2g01296 423 CDD B3_DNA 287 382 IPR003340 GO:0003677
Trre2g01296 423 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Trre2g01296 423 CDD B3_DNA 5 97 IPR003340 GO:0003677
Trre2g01296 423 Gene3D - 266 386 IPR015300 -
Trre2g01296 423 SMART B3_2 289 384 IPR003340 GO:0003677
Trre2g01296 423 SMART B3_2 7 99 IPR003340 GO:0003677
Trre2g01296 423 PANTHER B3 DOMAIN-CONTAINING 3 372 - -
Trre2g01296 423 Gene3D - 2 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01296 Trre-Chr2 10407947 10411108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01296 3 385 B3 DNA Binding Superfamily AT3G18990 51.163 7.70e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01296 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01296 - - gmx:100789352 632.484