Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01286 ATGGATCCTTCTATGAACCATGTTGGTCATGGAGGAATGGATAGAGGAGTACCAATTATGCATGAAAGTGATAGGTATGAACTTGTACGTGATATTGGTTCTGGAAATTTTGGGGTGGCTAGGCTTATGAGAGATAAACACACTAATCAACTTGTTGCTATTAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCACTGAGGCATCCAAATATTGTCAGATTCAAGGAGGTCATACTTACCCCTACACATTTAGCTATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGATTCAGCGAGGATGAGGCACGGTTTTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGCAAATATGTCATCGTGACTTGAAGTTGGAGAACACGTTGTTGGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGCGATTTTGGTTATTCAAAGTCCTCGGTGCTACATTCGCAACCAAAATCTACGGTCGGTACCCCTGCATATATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGCGGGGTGACCTTATATGTCATGTTGGTCGGTGCATATCCTTTTGAGGATCCACAGGAGCCTAAAAATTTCCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATCCCTGATTATGTTCAAATATCTCCCGAGTGCCGTCATTTGATCTCAAGGATCTTTGTTGCAGACCCTGCACAAAGAATAAGTATGCCTGAGTTTCGAAACCACGAGTGGTTTTTGAAGAACCTTCCAGCCGATCTCATAGTTGGGAATACAACGAACGACCATTTTCAGGAGCCTGAACAACCAATGCAGACGGTTGAAGAAATCATGCAGATAATTAGCGAGGCTACTATTCCCGCAGCTGGAACTCATCAGTCTCTCACTCAGTATCTTACCGGTAGCTTGGACATCGATGATGAAATGGACGAGGATATAGACACTGATCCTGACCTTGATATCGATAGCAGTGGTGAAATAGTTTATGCAATGTAA 1104 0.4167 MDPSMNHVGHGGMDRGVPIMHESDRYELVRDIGSGNFGVARLMRDKHTNQLVAIKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPQEPKNFRKTIHRILKVQYSIPDYVQISPECRHLISRIFVADPAQRISMPEFRNHEWFLKNLPADLIVGNTTNDHFQEPEQPMQTVEEIMQIISEATIPAAGTHQSLTQYLTGSLDIDDEMDEDIDTDPDLDIDSSGEIVYAM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01286 367 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
Trre2g01286 367 SMART serkin_6 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01286 367 CDD STKc_SnRK2-3 25 281 - -
Trre2g01286 367 SUPERFAMILY Protein kinase-like (PK-like) 18 316 IPR011009 -
Trre2g01286 367 Gene3D Transferase(Phosphotransferase) domain 1 102 290 - -
Trre2g01286 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre2g01286 367 FunFam Serine/threonine-protein kinase SRK2E 102 290 - -
Trre2g01286 367 PANTHER SERINE/THREONINE KINASE 25 311 - -
Trre2g01286 367 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Trre2g01286 367 FunFam Serine/threonine-protein kinase SRK2E 19 101 - -
Trre2g01286 367 ProSiteProfiles Protein kinase domain profile. 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01286 367 Pfam Protein kinase domain 26 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01286 Trre-Chr2 10361192 10363928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01286 25 286 CBL-interacting serine-threonine protein kinases AT5G25110 44.161 2.48e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre2g01286 Pkinase 3.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01286 K14498 - gmx:100804702 644.425