Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01248 ATGAAAGACTTCTATGTCCATAACAACATGATGATGACTCCGAATTTGAATCTTGAAGCTGAAAATAGTTTAGAAGTTAGCAGTCAAGTAGGTTCCAATGATCTTACCAAAGACAGTGCAACAACTTCTTCATGTCTAACAAATCTCACTAAGCCTGACATTAATCATCTAAGTTCTATTTCCCTTGATTTGACTCTCAACTTCGATCCGAGCGATGAAGATTTGAAGGAAACAAGTGATACTAATAGTGAAGTAGTAGGAGCTGATCATGCTCATAATACTACTACTTCAGCGCCACCGATTCATCGAGTTTTCTCTTGTAATTATTGTAAGAGAAAATTCTTTAGCTCACAAGCATTAGGTGGACATCAGAACGCTCATAAACGAGAGAGGACAATGGCAAAATGCGCTATGCGACTTGGAATGTTTACCGAAAGGGCTCATGAAATGAGAGCCACGGCAAAATTCGAGAAAGATTGTTTCGGAGTAGCACCGATGTTTATGCATAATGATGATGTTGGTATATTTTGGCCTGGAAGTTTCAGGCAGATAGATCAAAGTGTTGATGCTCACAATTCAAATTTGAATACTAATTTTGTTGTAGCAACAGAACCTCCTCAACAAAAATCTACAGCTCCTGATCTCACTCTGAGGCTTTAA 660 0.3833 MKDFYVHNNMMMTPNLNLEAENSLEVSSQVGSNDLTKDSATTSSCLTNLTKPDINHLSSISLDLTLNFDPSDEDLKETSDTNSEVVGADHAHNTTTSAPPIHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKCAMRLGMFTERAHEMRATAKFEKDCFGVAPMFMHNDDVGIFWPGSFRQIDQSVDAHNSNLNTNFVVATEPPQQKSTAPDLTLRL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01248 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Trre2g01248 219 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Trre2g01248 219 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 139 IPR044246 GO:0009788
Trre2g01248 219 Gene3D Classic Zinc Finger 79 161 - -
Trre2g01248 219 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01248 Trre-Chr2 10018109 10020009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01248 48 219 C2H2 Transcription Factor Family AT1G24625 40.385 1.13e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01248 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01248 - - psat:127096958 297.36