Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01236 ATGCAGCAAAACAACAACAACAACAATCCATTCCCAATCTCACTACACAACACACACGTAAAGCTTCTCGCTTTCGATTTCCTAACCCTAACACCACCATCTTCCCCAGACTACCCTTTCACACGCAAATCAATCCCAATCACACGCGCAGAAACCCTAGGAACAATCGTCCTCCGCGATTACAAACCTGCTAAATTCCTCCGTTTCGCAATCGACGACGGAACCGGCTGCATCCCCTGTATACTCTGGCTGAATCATATGACGTCTCCTCATCTAGCTCGACGTCGTAGTCCGCAGGATCTTTGTCTTCTTGCTGATGCTGCTTCGAGATCTGCTGCAATGGTGAAAGTTGGTGTTGTTGCTAGGGTTAGAGGGAAGGTTAGTGGATTTAAGGGTGGGGTTCAGATTACTGTTACTGATGTTTTTGTTGAAAGGGATCCTAATGCTGAGATTTTGCATTGGATTGAGTGTGTTAATTTGGCTAAGAATTGTTATAATCTTGTTAATGTTCCTTCTTCTTCTTCTTCTTCTTCTGGTTCTGTAATGCGCAAATAG 555 0.4432 MQQNNNNNNPFPISLHNTHVKLLAFDFLTLTPPSSPDYPFTRKSIPITRAETLGTIVLRDYKPAKFLRFAIDDGTGCIPCILWLNHMTSPHLARRRSPQDLCLLADAASRSAAMVKVGVVARVRGKVSGFKGGVQITVTDVFVERDPNAEILHWIECVNLAKNCYNLVNVPSSSSSSSGSVMRK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01236 184 Pfam OB-fold nucleic acid binding domain 57 142 IPR004365 GO:0003676
Trre2g01236 184 SUPERFAMILY Nucleic acid-binding proteins 37 159 IPR012340 -
Trre2g01236 184 Gene3D - 14 168 IPR012340 -
Trre2g01236 184 PANTHER REPLICATION PROTEIN A-RELATED 9 179 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01236 Trre-Chr2 9937306 9937860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01236 45 160 Core DNA Replication Machinery Family AT2G24490 25.862 3.50e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01236 K23312 - csin:114287844 203.371