Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01231 ATGTCTTTTCATTGGTTATATTTTACATGTCTATGTCTCATGGTTGGTTTAGAAGTAGAGCTATCAAATGCACAAATTTATAAAAGACATGGAAATAGGTTACTCCCTTACAAGACAATAATTGTTGACCCAAAGAGGAATGGAAATTTCTCTACAATACAATCTGCCATTAATTCTATCCCTTCAAACAATAGGTATTGGACTTCCATCAATATAAAAGCAGGCATCTACAGGGAGAAGTTGAAGATTCCACATGATAAGCCATACATCATTATACAAGGAGAGGGAATGAAGAAGACTATAGTTGAATGGAATGACCATGCAAATACTGCACAAAGCCCTACGTTCTTCACCATGGCTGACCATATTGTGGTCAAGTTTATCACTTTTAGGAATACATACAATGATCCAAAAAATGGCAATCCAATGGTACCTGCCGTAGCTGCAATGATAAGTGGTGACAAGTCATACTTCTATAGTGTTGCCTTCTTAGGTTTACAAGACACTTTGTGGGATGATGAAGGAAGACATTACTACAAGAATTGTTTAATTCAAGGTGCTGTTGATTTCATATTTGGTGCTGGCCAGTCATTATATGAGGAGTGTTCCATATATGTAATTGGTGCAGCTCTAGGACCAGGGATTTCTGGTTTTATAACAGCACAAGGGAGAACAAAACCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTTTGGAGATGGTACAACATATTTGGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACAATACAAATATGTCCAACATTGTACTACCTCTTGGTTGGGATCCATGGCATTTCGTTGGTCATGAGGATCACATACAATTTTCAGAGTATAAAAATTATGGACCTGGTTCTAACACAAACAATCGAGTGAAATGGATGAAGAAATTGGACTTGCGAACAGTTACTAGAATGGCAAGTATTGGTTTTATTGATGATGAAGGATGGGTTAAAAATCAACTATTCTAA 1008 0.3641 MSFHWLYFTCLCLMVGLEVELSNAQIYKRHGNRLLPYKTIIVDPKRNGNFSTIQSAINSIPSNNRYWTSINIKAGIYREKLKIPHDKPYIIIQGEGMKKTIVEWNDHANTAQSPTFFTMADHIVVKFITFRNTYNDPKNGNPMVPAVAAMISGDKSYFYSVAFLGLQDTLWDDEGRHYYKNCLIQGAVDFIFGAGQSLYEECSIYVIGAALGPGISGFITAQGRTKPNDANGFVFKNCNVFGDGTTYLGRPWRAYARVLFYNTNMSNIVLPLGWDPWHFVGHEDHIQFSEYKNYGPGSNTNNRVKWMKKLDLRTVTRMASIGFIDDEGWVKNQLF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01231 335 SUPERFAMILY Pectin lyase-like 36 331 IPR011050 -
Trre2g01231 335 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Trre2g01231 335 Gene3D - 36 335 IPR012334 -
Trre2g01231 335 Pfam Pectinesterase 40 319 IPR000070 GO:0030599|GO:0042545
Trre2g01231 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 331 - -
Trre2g01231 335 FunFam Pectinesterase 36 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01231 Trre-Chr2 9898683 9901273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01231 3 283 Carbohydrate Esterase AT2G19150 45.745 1.29e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01231 - - gmx:100819252 466.848