Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01230 ATGTCTTTTCTCCATTGGTTAATCTATTTTACATGTCTAGGTCTCATGTTTGATTTGGGAGTAGAGCTATCAAATGCTCAAATTCATAAAACATATGGAAATAGGTTACTCCCTTACAAGACAATAATTGTTGACTCAAAGGGGCATGGAAATTTTTCTACCATACAATCTGCTATTGATTCTATCCCTTCAAACAATAGGTATTGGACTTCCATCAATATTAAAGCAGGACTCTACAGGGAGAAGTTGACGATTCCACATGATAAGCCTTATATCATTATACAAGGAGAGGGAATGAAGAAGACTATAGTTGAATGGGATGACCATGCATCTACTTTACAAAGCCCTACATTCTCCGCCGGGGCTGACCATATTGTGGTCAAGTTTATCACCTTTAAGAATTCATACAATGATCCAGGAAAAGGTAACCCATTAGCACCAGCCGTAGCTGCAATGATAAGTGGTGACAAGGCATACTTCCATAGTGTTGCCTTCTTAGGTTTACAAGACACTTTGTGGGATGATGAAGGAAGACATTACTACACAAATTGTTTCATACAAGGTGCTACTGATTTCATATTTGGTGCTGGTCAGTCTTTATATGAGGATTGTTTCATATCTGTAAAAACTGCAGCTCTAGGGGTTCCTGGTTTTATAACAGCACAAGCGAGAACAAATCCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTTTGGAAATGGTACAACATATTTAGGAAGACCATGGAGAGCATATGCTAGAGTTCTTTTCTACAATACCAATATGTCCAACATTGTACTACCTCTTGGTTGGGATCCATGGAATTTCGTTGGTCATGAGGATCGCATACAATTTTCAGAGTATCAAAATTATGGACCTGGTTCTAATACAAACAATAGAGTGAAATGGATGAAGCAATTGGACTTGCCAACGGTTACTAAAATGACAAGTATTGGTTTTATTGATGATGAAGGATGGGTTAAGAATCAACTATTCTAA 1008 0.371 MSFLHWLIYFTCLGLMFDLGVELSNAQIHKTYGNRLLPYKTIIVDSKGHGNFSTIQSAIDSIPSNNRYWTSINIKAGLYREKLTIPHDKPYIIIQGEGMKKTIVEWDDHASTLQSPTFSAGADHIVVKFITFKNSYNDPGKGNPLAPAVAAMISGDKAYFHSVAFLGLQDTLWDDEGRHYYTNCFIQGATDFIFGAGQSLYEDCFISVKTAALGVPGFITAQARTNPNDANGFVFKNCNVFGNGTTYLGRPWRAYARVLFYNTNMSNIVLPLGWDPWNFVGHEDRIQFSEYQNYGPGSNTNNRVKWMKQLDLPTVTKMTSIGFIDDEGWVKNQLF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01230 335 ProSitePatterns Pectinesterase signature 2. 186 195 IPR033131 -
Trre2g01230 335 SUPERFAMILY Pectin lyase-like 38 331 IPR011050 -
Trre2g01230 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 331 - -
Trre2g01230 335 Gene3D - 38 335 IPR012334 -
Trre2g01230 335 FunFam Pectinesterase 38 334 - -
Trre2g01230 335 Pfam Pectinesterase 42 325 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01230 Trre-Chr2 9892965 9896932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01230 40 283 Carbohydrate Esterase AT2G19150 48.583 6.46e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01230 - - gmx:100819252 435.261