Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01228 ATGGGTTTCGGAGTTTCCTACGTTGTTCACGTCGTTGTGCTGTTTTCTTTGATGTTTGTTTGTTCATGGTCTCAAGATGATGCTGCTGTCATGCAAACGCTGAAAAAACAAATTATTTCTTCAAGTGGTGGTCTTAATTGGTCAGACTCAGATATTTCCAAATGGAATAATCTTCAGTTTAGTGGAAATAATAGGGTCACTTCCATTAATATTGCGAATCTCAATGTTCATGGTTCTTTACCAAAAGAATTGGTGCAACTCACTGAGTTAACTACTTTTCAGTGCAGTGGAAATAGTTTATCTGGAAATTTTCCTTACATGCCAAATTCCCTTCAGAAGTTGTCTATTGACAGCAACAATTTCAATTCCATGCCAAATGATTTCTTCACCAACCTCACTAATTTGATAGAGGTGAGAATTGATTATAACCCTTTTTCTCAATGGCAAATTCCTTCTAGTCTTAAGAATTGTCTAGCCCTTCAGACTTTTTCTGCTGTCAATGTTAGTTTTGTTGGTCAAATTCCTGATTTCTTTGGACAAGAAAATTTTCAAACTTTGAAGTTGTCTTTTAATTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTAGTAGTACTTCAATACAGAAGCTTTGGGTGAATGGTCAAAAAAGTAATAGTAAACTCAATGGTACACTTTCTGTTTTACAAAATATGACTTCATTGCAACAAATTTGGGTTCATGGCAATTCGTTTACCGGTCCTATACCTGATTTTTCAAATCTTGATCAATTGTCTGATGTTAGTTTGAGGGATAATAAGTTAACTGGTGTTGTGCCATTGTCTTTAACTAACCTTACAAGTTTGGAATTTGTGAATTTGACAAACAATAATCTTCAAGGTTCACCTCCTATGTTTCCAAACGGTGTTCGGGTTGATATGGATTTGGATAAAGGAACTAATAGCTTTTGCACTAAGGTTGTTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTCAACCTTTTGGTTATCCTCTTAAACTTGCTCAAAGTTGGCAAGGTAATAACCCTTGTAATGGAACTACTTGGCAAGGGATTACATGTTCTGGTGGTAATATTTCTGCTATTAACTTTCAAAACATGGGTTTTTCTGGCACTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGAATTTGATTCTTGCTAACAATAATCTCACCGGTACCATACCTATGGAACTTGCTAGTATGCCGGCTCTAAAAGAGCTAGATGTTTCCAATAATTCGTTATATGGTCAGATACCGTTGTTTCGGGCAGGTGTGGTTGTTAACACCGATGGGAATCCTGATATCGGAAAGGATAAACCTCACCTGTCGCCCGGCTCTAGTTCTGGAGGGGAAGATAAGAAGAAACTTGGTGTTGGATTTATTGTTGGTGTTGTGATTGGGATTGTTGGCTTGCTTGGTGTAGGGGTTTTGGTATTTGTTATGTATGGTAGAAGACATAATAAGCAGGATGGGAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTAGAGATGGAAATGCTATGAAGATTAGTGTTGCAGCATCTGGAAGTGCTGGTGCCGGGGTTGTAGGAGGAACTGGTGGTTTTAGTCCATCGACTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTCATTTCGATTCAAGTTCTGAGAGAAGTTACCGATAATTTTTGCGAAAAGAACATATTGGGGAAGGGAGGTTTCGGCACTGTATACAAAGGAGAATTGGCTGATGGAACGAAGATCGCAGTTAAAAGGATGCAATCTGAAATGGGTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATTGCAGTTCTTACTAAGGTTCGACACAGGCATTTGGTCGGACTTCTCGGCTATTGCTTGGAAGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGTACTCTTAGTCAACATTTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGACTGGAAGACAAGGCTCTCTATTGCCTTGGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATATTTTTATCCACAGGGATCTGAAACCGTCAAACATTTTGCTTGGCGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTCACCGGACGAGTCACCACAAAGGTCGACGTATACAGCTACGGCGTGATTCTTATGGAGATTATAACCGGAAGGAGAGCAATTGACAACAGCCAACCAGAGGAAAATGCGCACCTTGTTACATGGTTCCGCAGGATTCTACTGAACAAAGACTCCTTCGAAAAGGTCATTGATCCAGCAATGGATATCAACGAGGAAGGGTTGGGGAGTTTTAGGGATATTGCAGGGCTGGCGAGCCACTGTTGTGCAAGAGAGCCTAATCAGCGCCCCGAAATGGGACAGATAGTGAATGTGCTAGCACCTCTTGTCGAGATTTGGAACCCGGCTGAACCTGATGACGATGACATGTTTGGGATTGACTTGGATATGAGTTTGCCTCAAGTACTAAGAAAGTGGCAGAACCTTGAAGGAATGAGCAACACACTCGATGTTTCTTCATCGATGAGTGCTAGTTGTGAAAATACACAATCAAGTATACCACCTCGGTCTCCTCCATTTGTTAATCCCCTTACATCTGCAAATGCGCGATGA 2784 0.4066 MGFGVSYVVHVVVLFSLMFVCSWSQDDAAVMQTLKKQIISSSGGLNWSDSDISKWNNLQFSGNNRVTSINIANLNVHGSLPKELVQLTELTTFQCSGNSLSGNFPYMPNSLQKLSIDSNNFNSMPNDFFTNLTNLIEVRIDYNPFSQWQIPSSLKNCLALQTFSAVNVSFVGQIPDFFGQENFQTLKLSFNSLEGNLPNSLSSSTSIQKLWVNGQKSNSKLNGTLSVLQNMTSLQQIWVHGNSFTGPIPDFSNLDQLSDVSLRDNKLTGVVPLSLTNLTSLEFVNLTNNNLQGSPPMFPNGVRVDMDLDKGTNSFCTKVVGQPCSPLVNALLSVVQPFGYPLKLAQSWQGNNPCNGTTWQGITCSGGNISAINFQNMGFSGTISPSFASLSSVTNLILANNNLTGTIPMELASMPALKELDVSNNSLYGQIPLFRAGVVVNTDGNPDIGKDKPHLSPGSSSGGEDKKKLGVGFIVGVVIGIVGLLGVGVLVFVMYGRRHNKQDGKVQTPNAIVVHPRHSRDGNAMKISVAASGSAGAGVVGGTGGFSPSTSVQNVEAGNMVISIQVLREVTDNFCEKNILGKGGFGTVYKGELADGTKIAVKRMQSEMGGDKGLNEFKSEIAVLTKVRHRHLVGLLGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEIITGRRAIDNSQPEENAHLVTWFRRILLNKDSFEKVIDPAMDINEEGLGSFRDIAGLASHCCAREPNQRPEMGQIVNVLAPLVEIWNPAEPDDDDMFGIDLDMSLPQVLRKWQNLEGMSNTLDVSSSMSASCENTQSSIPPRSPPFVNPLTSANAR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01228 927 SUPERFAMILY Protein kinase-like (PK-like) 562 875 IPR011009 -
Trre2g01228 927 FunFam Leucine-rich repeat receptor-like kinase 326 451 - -
Trre2g01228 927 Gene3D Ribonuclease Inhibitor 24 322 IPR032675 -
Trre2g01228 927 MobiDBLite consensus disorder prediction 896 912 - -
Trre2g01228 927 MobiDBLite consensus disorder prediction 896 927 - -
Trre2g01228 927 PANTHER OSJNBA0070M12.3 PROTEIN 9 925 - -
Trre2g01228 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Trre2g01228 927 Gene3D Phosphorylase Kinase; domain 1 545 651 - -
Trre2g01228 927 Gene3D Ribonuclease Inhibitor 327 452 IPR032675 -
Trre2g01228 927 FunFam receptor protein kinase TMK1 542 651 - -
Trre2g01228 927 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Trre2g01228 927 Pfam Protein tyrosine and serine/threonine kinase 577 850 IPR001245 GO:0004672|GO:0006468
Trre2g01228 927 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01228 927 CDD STKc_IRAK 580 853 - -
Trre2g01228 927 FunFam receptor protein kinase TMK1 652 869 - -
Trre2g01228 927 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01228 927 FunFam Receptor-like kinase TMK4 25 321 - -
Trre2g01228 927 Gene3D Transferase(Phosphotransferase) domain 1 652 865 - -
Trre2g01228 927 SUPERFAMILY L domain-like 46 434 - -
Trre2g01228 927 MobiDBLite consensus disorder prediction 445 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01228 Trre-Chr2 9874336 9877534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01228 66 856 Receptor kinase-like Gene Family AT5G07280 31.227 3.22e-84 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre2g01228 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01228 K00924 - gmx:100776064 1174.07